RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TNRQ92752 1358 aa22.54■■□□□ 1.2
CCDC3-201ENST00000378825 SLC26A8Q96RN1 970 aa22.54■■□□□ 1.2
CCDC3-201ENST00000378825 GADD45BO75293 160 aaPredicted RBP22.53■■□□□ 1.2
CCDC3-201ENST00000378825 UPF3BQ9BZI7 483 aaKnown RBP22.53■■□□□ 1.2
CCDC3-201ENST00000378825 LTKP29376 864 aa22.53■■□□□ 1.2
CCDC3-201ENST00000378825 KIF24Q5T7B8 1368 aa22.53■■□□□ 1.2
CCDC3-201ENST00000378825 DTNBO60941 627 aa22.52■■□□□ 1.2
CCDC3-201ENST00000378825 CDK12Q9NYV4 1490 aaPredicted RBP22.52■■□□□ 1.2
CCDC3-201ENST00000378825 CHL1O00533 1208 aa22.51■■□□□ 1.19
CCDC3-201ENST00000378825 BRD1O95696 1058 aa22.51■■□□□ 1.19
CCDC3-201ENST00000378825 HDGFP51858 240 aaKnown RBP22.51■■□□□ 1.19
CCDC3-201ENST00000378825 EIF4A2Q14240 407 aaKnown RBP22.51■■□□□ 1.19
CCDC3-201ENST00000378825 FOXO3O43524 673 aa22.5■■□□□ 1.19
CCDC3-201ENST00000378825 ZNF830Q96NB3 372 aaPredicted RBP22.5■■□□□ 1.19
CCDC3-201ENST00000378825 IL25Q9H293 177 aa22.5■■□□□ 1.19
CCDC3-201ENST00000378825 TMEM2Q9UHN6 1383 aa22.5■■□□□ 1.19
CCDC3-201ENST00000378825 UNC5CLQ8IV45 518 aa22.49■■□□□ 1.19
CCDC3-201ENST00000378825 TSC1Q92574 1164 aa22.49■■□□□ 1.19
CCDC3-201ENST00000378825 ANO2Q9NQ90 1003 aa22.49■■□□□ 1.19
CCDC3-201ENST00000378825 RILPL2Q969X0 211 aa22.48■■□□□ 1.19
CCDC3-201ENST00000378825 ACEP12821 1306 aa22.48■■□□□ 1.19
CCDC3-201ENST00000378825 ESYT1Q9BSJ8 1104 aa22.48■■□□□ 1.19
CCDC3-201ENST00000378825 LARP6Q9BRS8 491 aaKnown RBP22.47■■□□□ 1.19
CCDC3-201ENST00000378825 AATKQ6ZMQ8 1374 aa22.47■■□□□ 1.19
CCDC3-201ENST00000378825 TERF1P54274 439 aa22.46■■□□□ 1.19
CCDC3-201ENST00000378825 C17orf53Q8N3J3 647 aaPredicted RBP22.46■■□□□ 1.19
CCDC3-201ENST00000378825 NECTIN2Q92692 538 aa22.46■■□□□ 1.19
CCDC3-201ENST00000378825 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.46■■□□□ 1.19
CCDC3-201ENST00000378825 PNMA6EA0A0J9YXQ4 647 aa22.46■■□□□ 1.19
CCDC3-201ENST00000378825 PTMAP06454 111 aaKnown RBP22.46■■□□□ 1.19
CCDC3-201ENST00000378825 CCDC39Q9UFE4 941 aa22.46■■□□□ 1.19
CCDC3-201ENST00000378825 TCHHQ07283 1943 aa22.46■■□□□ 1.19
CCDC3-201ENST00000378825 TRIM6-TRIM34B2RNG4 842 aa22.45■■□□□ 1.19
CCDC3-201ENST00000378825 HSP90AB2PQ58FF8 381 aa22.45■■□□□ 1.19
CCDC3-201ENST00000378825 TTC21BQ7Z4L5 1316 aa22.45■■□□□ 1.18
CCDC3-201ENST00000378825 TSPY26PQ9H489 355 aa22.44■■□□□ 1.18
CCDC3-201ENST00000378825 OSBPL3Q9H4L5 887 aa22.44■■□□□ 1.18
CCDC3-201ENST00000378825 MBD3O95983 291 aa22.44■■□□□ 1.18
CCDC3-201ENST00000378825 CUL4AQ13619 759 aa22.44■■□□□ 1.18
CCDC3-201ENST00000378825 ADAMTS13Q76LX8 1427 aa22.43■■□□□ 1.18
CCDC3-201ENST00000378825 PTPRCP08575 1304 aa22.43■■□□□ 1.18
CCDC3-201ENST00000378825 TECPR2O15040 1411 aa22.43■■□□□ 1.18
CCDC3-201ENST00000378825 CHMLP26374 656 aa22.43■■□□□ 1.18
CCDC3-201ENST00000378825 USP48Q86UV5 1035 aa22.43■■□□□ 1.18
CCDC3-201ENST00000378825 KIF13AQ9H1H9 1805 aa22.42■■□□□ 1.18
CCDC3-201ENST00000378825 SALL3Q9BXA9 1300 aa22.42■■□□□ 1.18
CCDC3-201ENST00000378825 HMMRO75330 724 aa22.42■■□□□ 1.18
CCDC3-201ENST00000378825 MAP4K4O95819 1239 aaPredicted RBP22.42■■□□□ 1.18
CCDC3-201ENST00000378825 SIRT1Q96EB6 747 aa22.42■■□□□ 1.18
CCDC3-201ENST00000378825 FAM177BA6PVY3 158 aa22.41■■□□□ 1.18
CCDC3-201ENST00000378825 USP25Q9UHP3 1055 aa22.41■■□□□ 1.18
CCDC3-201ENST00000378825 MX1P20591 662 aa22.41■■□□□ 1.18
CCDC3-201ENST00000378825 IL1RAPL2Q9NP60 686 aa22.4■■□□□ 1.18
CCDC3-201ENST00000378825 TTC12Q9H892 705 aaPredicted RBP22.39■■□□□ 1.18
CCDC3-201ENST00000378825 PRDM10Q9NQV6 1147 aa22.39■■□□□ 1.18
CCDC3-201ENST00000378825 SASS6Q6UVJ0 657 aa22.39■■□□□ 1.17
CCDC3-201ENST00000378825 MON2Q7Z3U7 1717 aa22.39■■□□□ 1.17
CCDC3-201ENST00000378825 LRRCC1Q9C099 1032 aa22.38■■□□□ 1.17
CCDC3-201ENST00000378825 CSPP1Q1MSJ5 1256 aa22.38■■□□□ 1.17
CCDC3-201ENST00000378825 TSPYL4Q9UJ04 414 aa22.38■■□□□ 1.17
CCDC3-201ENST00000378825 KIAA0232Q92628 1395 aa22.38■■□□□ 1.17
CCDC3-201ENST00000378825 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.38■■□□□ 1.17
CCDC3-201ENST00000378825 GNAI2P04899 355 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 MCM5P33992 734 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 CRB1P82279 1406 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 C3P01024 1663 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 DNTTIP2Q5QJE6 756 aaKnown RBP22.37■■□□□ 1.17
CCDC3-201ENST00000378825 CNPY2Q9Y2B0 182 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 AMOTL2Q9Y2J4 779 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 UBR1Q8IWV7 1749 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 PTPRUQ92729 1446 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 SRCIN1Q9C0H9 1055 aa22.37■■□□□ 1.17
CCDC3-201ENST00000378825 DYNC1I1O14576 645 aa22.36■■□□□ 1.17
CCDC3-201ENST00000378825 PRDM4Q9UKN5 801 aa22.36■■□□□ 1.17
CCDC3-201ENST00000378825 HCLS1P14317 486 aaPredicted RBP22.36■■□□□ 1.17
CCDC3-201ENST00000378825 KIAA2012Q0VF49 1180 aa22.36■■□□□ 1.17
CCDC3-201ENST00000378825 MTHFSDQ2M296 383 aaKnown RBP22.36■■□□□ 1.17
CCDC3-201ENST00000378825 NUTM1Q86Y26 1132 aa22.36■■□□□ 1.17
CCDC3-201ENST00000378825 ITSN1Q15811 1721 aa22.35■■□□□ 1.17
CCDC3-201ENST00000378825 LRRFIP2Q9Y608 721 aaKnown RBP22.34■■□□□ 1.17
CCDC3-201ENST00000378825 RIMS1Q86UR5 1692 aaKnown RBP22.34■■□□□ 1.17
CCDC3-201ENST00000378825 CPA1P15085 419 aa22.34■■□□□ 1.17
CCDC3-201ENST00000378825 MCCP23508 829 aa22.34■■□□□ 1.17
CCDC3-201ENST00000378825 MCM2P49736 904 aa22.34■■□□□ 1.17
CCDC3-201ENST00000378825 NUTM2GQ5VZR2 741 aa22.34■■□□□ 1.17
CCDC3-201ENST00000378825 INTS4Q96HW7 963 aaKnown RBP22.34■■□□□ 1.17
CCDC3-201ENST00000378825 AKAP12Q02952 1782 aa22.34■■□□□ 1.17
CCDC3-201ENST00000378825 PLEKHG3A1L390 1219 aa22.33■■□□□ 1.17
CCDC3-201ENST00000378825 CCT4P50991 539 aaKnown RBP22.33■■□□□ 1.17
CCDC3-201ENST00000378825 FKBP5Q13451 457 aaPredicted RBP22.33■■□□□ 1.17
CCDC3-201ENST00000378825 EID1Q9Y6B2 187 aa22.33■■□□□ 1.17
CCDC3-201ENST00000378825 MAP3K19Q56UN5 1328 aa22.33■■□□□ 1.17
CCDC3-201ENST00000378825 RPAP1Q9BWH6 1393 aaPredicted RBP22.33■■□□□ 1.17
CCDC3-201ENST00000378825 USP6P35125 1406 aa22.33■■□□□ 1.16
CCDC3-201ENST00000378825 PLEKHG1Q9ULL1 1385 aa22.32■■□□□ 1.16
CCDC3-201ENST00000378825 HAP1P54257 671 aaPredicted RBP22.32■■□□□ 1.16
CCDC3-201ENST00000378825 PLCB2Q00722 1185 aa22.32■■□□□ 1.16
CCDC3-201ENST00000378825 NGDNQ8NEJ9 315 aaKnown RBP22.32■■□□□ 1.16
CCDC3-201ENST00000378825 TUBGCP6Q96RT7 1819 aa22.32■■□□□ 1.16
CCDC3-201ENST00000378825 ADCY5O95622 1261 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms