RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 PPP2R1AP30153 589 aa22.6■■□□□ 1.21
HMGN4-201ENST00000377575 ATG3Q9NT62 314 aa22.6■■□□□ 1.21
HMGN4-201ENST00000377575 ADAMTS7Q9UKP4 1686 aa22.6■■□□□ 1.21
HMGN4-201ENST00000377575 COL5A3P25940 1745 aaPredicted RBP22.6■■□□□ 1.21
HMGN4-201ENST00000377575 AK7Q96M32 723 aa22.59■■□□□ 1.21
HMGN4-201ENST00000377575 MRC1P22897 1456 aa22.59■■□□□ 1.21
HMGN4-201ENST00000377575 FLAD1Q8NFF5 587 aa22.58■■□□□ 1.21
HMGN4-201ENST00000377575 SGIP1Q9BQI5 828 aa22.58■■□□□ 1.21
HMGN4-201ENST00000377575 MSH5O43196 834 aa22.57■■□□□ 1.2
HMGN4-201ENST00000377575 ATP6V1AP38606 617 aa22.57■■□□□ 1.2
HMGN4-201ENST00000377575 NUDCQ9Y266 331 aa22.57■■□□□ 1.2
HMGN4-201ENST00000377575 CICQ96RK0 1608 aaPredicted RBP22.57■■□□□ 1.2
HMGN4-201ENST00000377575 POLD1P28340 1107 aa22.56■■□□□ 1.2
HMGN4-201ENST00000377575 MTHFSDQ2M296 383 aaKnown RBP22.55■■□□□ 1.2
HMGN4-201ENST00000377575 COL23A1Q86Y22 540 aaPredicted RBP22.55■■□□□ 1.2
HMGN4-201ENST00000377575 LINC00116Q8NCU8 138 aa22.55■■□□□ 1.2
HMGN4-201ENST00000377575 NFATC2IPQ8NCF5 419 aa22.54■■□□□ 1.2
HMGN4-201ENST00000377575 ARXQ96QS3 562 aa22.54■■□□□ 1.2
HMGN4-201ENST00000377575 RBM42Q9BTD8 480 aaKnown RBP22.54■■□□□ 1.2
HMGN4-201ENST00000377575 ITPK1Q13572 414 aa22.53■■□□□ 1.2
HMGN4-201ENST00000377575 GAS2L2Q8NHY3 880 aa22.53■■□□□ 1.2
HMGN4-201ENST00000377575 TJP1Q07157 1748 aa22.52■■□□□ 1.2
HMGN4-201ENST00000377575 RNMTO43148 476 aaKnown RBP22.52■■□□□ 1.2
HMGN4-201ENST00000377575 SLC52A2Q9HAB3 445 aa22.52■■□□□ 1.2
HMGN4-201ENST00000377575 MAP3K5Q99683 1374 aa22.51■■□□□ 1.19
HMGN4-201ENST00000377575 SSFA2P28290 1259 aa22.51■■□□□ 1.19
HMGN4-201ENST00000377575 DCAF8L1A6NGE4 600 aa22.5■■□□□ 1.19
HMGN4-201ENST00000377575 FHDC1Q9C0D6 1143 aaPredicted RBP22.5■■□□□ 1.19
HMGN4-201ENST00000377575 RSPH6AQ9H0K4 717 aa22.5■■□□□ 1.19
HMGN4-201ENST00000377575 LGR6Q9HBX8 967 aa22.5■■□□□ 1.19
HMGN4-201ENST00000377575 SIPA1L3O60292 1781 aaPredicted RBP22.5■■□□□ 1.19
HMGN4-201ENST00000377575 UBR2Q8IWV8 1755 aa22.49■■□□□ 1.19
HMGN4-201ENST00000377575 GNPATO15228 680 aa22.49■■□□□ 1.19
HMGN4-201ENST00000377575 PHF14O94880 888 aa22.49■■□□□ 1.19
HMGN4-201ENST00000377575 U2AF1L5P0DN76 240 aaPredicted RBP22.49■■□□□ 1.19
HMGN4-201ENST00000377575 PRKAR2BP31323 418 aa22.49■■□□□ 1.19
HMGN4-201ENST00000377575 U2AF1Q01081 240 aaKnown RBP eCLIP22.49■■□□□ 1.19
HMGN4-201ENST00000377575 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.48■■□□□ 1.19
HMGN4-201ENST00000377575 ZEB1P37275 1124 aaPredicted RBP22.48■■□□□ 1.19
HMGN4-201ENST00000377575 SLC4A9Q96Q91 983 aa22.48■■□□□ 1.19
HMGN4-201ENST00000377575 GNAT3A8MTJ3 354 aa22.47■■□□□ 1.19
HMGN4-201ENST00000377575 PTCD1O75127 700 aaKnown RBP22.47■■□□□ 1.19
HMGN4-201ENST00000377575 SYT17Q9BSW7 474 aa22.47■■□□□ 1.19
HMGN4-201ENST00000377575 CNTNAP4Q9C0A0 1308 aa22.47■■□□□ 1.19
HMGN4-201ENST00000377575 MYH14Q7Z406 1995 aaKnown RBP22.47■■□□□ 1.19
HMGN4-201ENST00000377575 DDX10Q13206 875 aaKnown RBP22.46■■□□□ 1.19
HMGN4-201ENST00000377575 AMIGO3Q86WK7 504 aa22.46■■□□□ 1.19
HMGN4-201ENST00000377575 C4AP0C0L4 1744 aa22.45■■□□□ 1.19
HMGN4-201ENST00000377575 FCHSD2O94868 740 aa22.45■■□□□ 1.18
HMGN4-201ENST00000377575 RALBP1Q15311 655 aa22.45■■□□□ 1.18
HMGN4-201ENST00000377575 RC3H1Q5TC82 1133 aaKnown RBP22.45■■□□□ 1.18
HMGN4-201ENST00000377575 MSL1Q68DK7 614 aa22.45■■□□□ 1.18
HMGN4-201ENST00000377575 RTCBQ9Y3I0 505 aaKnown RBP22.45■■□□□ 1.18
HMGN4-201ENST00000377575 KCPQ6ZWJ8 1503 aa22.45■■□□□ 1.18
HMGN4-201ENST00000377575 TEFQ10587 303 aa22.43■■□□□ 1.18
HMGN4-201ENST00000377575 KLHL34Q8N239 644 aa22.43■■□□□ 1.18
HMGN4-201ENST00000377575 PHACTR3Q96KR7 559 aa22.43■■□□□ 1.18
HMGN4-201ENST00000377575 CEMIPQ8WUJ3 1361 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 DLG5Q8TDM6 1919 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 NEFMP07197 916 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 SLC39A6Q13433 755 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 TRAPPC3LQ5T215 181 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 SMIM5Q71RC9 77 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 TTC5Q8N0Z6 440 aa22.4■■□□□ 1.18
HMGN4-201ENST00000377575 RPS6KA4O75676 772 aa22.39■■□□□ 1.17
HMGN4-201ENST00000377575 CRKLP46109 303 aaKnown RBP22.39■■□□□ 1.17
HMGN4-201ENST00000377575 IL17REQ8NFR9 667 aa22.39■■□□□ 1.17
HMGN4-201ENST00000377575 RTF1Q92541 710 aaKnown RBP22.38■■□□□ 1.17
HMGN4-201ENST00000377575 VSIG10Q8N0Z9 540 aa22.37■■□□□ 1.17
HMGN4-201ENST00000377575 MYBBP1AQ9BQG0 1328 aaKnown RBP22.36■■□□□ 1.17
HMGN4-201ENST00000377575 DNAJC10Q8IXB1 793 aa22.36■■□□□ 1.17
HMGN4-201ENST00000377575 RFC4P35249 363 aa22.35■■□□□ 1.17
HMGN4-201ENST00000377575 PNNQ9H307 717 aaKnown RBP22.35■■□□□ 1.17
HMGN4-201ENST00000377575 ZNF790Q6PG37 636 aa22.34■■□□□ 1.17
HMGN4-201ENST00000377575 ARHGEF1Q92888 912 aaKnown RBP22.34■■□□□ 1.17
HMGN4-201ENST00000377575 CCDC87Q9NVE4 849 aa22.34■■□□□ 1.17
HMGN4-201ENST00000377575 CHD4Q14839 1912 aa22.33■■□□□ 1.17
HMGN4-201ENST00000377575 HTATSF1O43719 755 aaKnown RBP22.33■■□□□ 1.17
HMGN4-201ENST00000377575 CD2APQ9Y5K6 639 aa22.32■■□□□ 1.16
HMGN4-201ENST00000377575 MAPK8IP3Q9UPT6 1336 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 HEG1Q9ULI3 1381 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 BTBD11A6QL63 1104 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 CYP19A1P11511 503 aaPredicted RBP22.31■■□□□ 1.16
HMGN4-201ENST00000377575 INTS5Q6P9B9 1019 aaKnown RBP22.31■■□□□ 1.16
HMGN4-201ENST00000377575 NLGN1Q8N2Q7 840 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 NLGN2Q8NFZ4 835 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 UTRNP46939 3433 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 KIF13BQ9NQT8 1826 aa22.31■■□□□ 1.16
HMGN4-201ENST00000377575 MCM10Q7L590 875 aa22.3■■□□□ 1.16
HMGN4-201ENST00000377575 FMNL2Q96PY5 1086 aa22.3■■□□□ 1.16
HMGN4-201ENST00000377575 SOS1Q07889 1333 aaPredicted RBP22.3■■□□□ 1.16
HMGN4-201ENST00000377575 STARD3NLO95772 234 aa22.29■■□□□ 1.16
HMGN4-201ENST00000377575 MMP10P09238 476 aa22.29■■□□□ 1.16
HMGN4-201ENST00000377575 GYS1P13807 737 aa22.29■■□□□ 1.16
HMGN4-201ENST00000377575 ZNF496Q96IT1 587 aaPredicted RBP22.29■■□□□ 1.16
HMGN4-201ENST00000377575 PLEKHF1Q96S99 279 aa22.29■■□□□ 1.16
HMGN4-201ENST00000377575 USP42Q9H9J4 1324 aaKnown RBP22.29■■□□□ 1.16
HMGN4-201ENST00000377575 COL15A1P39059 1388 aa22.28■■□□□ 1.16
HMGN4-201ENST00000377575 GPR162Q16538 588 aa22.28■■□□□ 1.16
HMGN4-201ENST00000377575 TEX13AQ9BXU3 409 aaPredicted RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms