RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 SULT6B1Q6IMI4 303 aa28.64■■■□□ 2.18
VSX1-201ENST00000376707 AMIGO3Q86WK7 504 aa28.64■■■□□ 2.18
VSX1-201ENST00000376707 SSFA2P28290 1259 aa28.63■■■□□ 2.17
VSX1-201ENST00000376707 UTRNP46939 3433 aa28.62■■■□□ 2.17
VSX1-201ENST00000376707 C1orf141Q5JVX7 400 aa28.62■■■□□ 2.17
VSX1-201ENST00000376707 SMIM5Q71RC9 77 aa28.62■■■□□ 2.17
VSX1-201ENST00000376707 GNPATO15228 680 aa28.61■■■□□ 2.17
VSX1-201ENST00000376707 IL13P35225 146 aa28.61■■■□□ 2.17
VSX1-201ENST00000376707 MTHFSP49914 203 aa28.6■■■□□ 2.17
VSX1-201ENST00000376707 CABP4P57796 275 aa28.6■■■□□ 2.17
VSX1-201ENST00000376707 ZNF784Q8NCA9 323 aaPredicted RBP28.6■■■□□ 2.17
VSX1-201ENST00000376707 RBM42Q9BTD8 480 aaKnown RBP28.59■■■□□ 2.17
VSX1-201ENST00000376707 KDRP35968 1356 aa28.59■■■□□ 2.17
VSX1-201ENST00000376707 UBR3Q6ZT12 1888 aa28.59■■■□□ 2.17
VSX1-201ENST00000376707 KDM6AO15550 1401 aaPredicted RBP28.59■■■□□ 2.17
VSX1-201ENST00000376707 CD2APQ9Y5K6 639 aa28.57■■■□□ 2.16
VSX1-201ENST00000376707 PER1O15534 1290 aaPredicted RBP28.56■■■□□ 2.16
VSX1-201ENST00000376707 CC2D1BQ5T0F9 858 aaKnown RBP28.56■■■□□ 2.16
VSX1-201ENST00000376707 CHD4Q14839 1912 aa28.54■■■□□ 2.16
VSX1-201ENST00000376707 GRIN3BO60391 1043 aa28.53■■■□□ 2.16
VSX1-201ENST00000376707 SLC4A9Q96Q91 983 aa28.53■■■□□ 2.16
VSX1-201ENST00000376707 YBX3P16989 372 aaKnown RBP eCLIP28.52■■■□□ 2.16
VSX1-201ENST00000376707 RTCBQ9Y3I0 505 aaKnown RBP28.52■■■□□ 2.16
VSX1-201ENST00000376707 NFATC2IPQ8NCF5 419 aa28.51■■■□□ 2.15
VSX1-201ENST00000376707 PTCD1O75127 700 aaKnown RBP28.49■■■□□ 2.15
VSX1-201ENST00000376707 HMOX1P09601 288 aa28.49■■■□□ 2.15
VSX1-201ENST00000376707 TRAPPC3LQ5T215 181 aa28.49■■■□□ 2.15
VSX1-201ENST00000376707 RC3H1Q5TC82 1133 aaKnown RBP28.49■■■□□ 2.15
VSX1-201ENST00000376707 ZNF831Q5JPB2 1677 aa28.48■■■□□ 2.15
VSX1-201ENST00000376707 DIAPH1O60610 1272 aaKnown RBP28.48■■■□□ 2.15
VSX1-201ENST00000376707 CNGB1Q14028 1251 aaPredicted RBP28.48■■■□□ 2.15
VSX1-201ENST00000376707 AKAP4Q5JQC9 854 aa28.48■■■□□ 2.15
VSX1-201ENST00000376707 CNTNAP4Q9C0A0 1308 aa28.47■■■□□ 2.15
VSX1-201ENST00000376707 ADRA2BP18089 450 aa28.45■■■□□ 2.14
VSX1-201ENST00000376707 NPC1L1Q9UHC9 1359 aa28.45■■■□□ 2.14
VSX1-201ENST00000376707 RPS6KA4O75676 772 aa28.44■■■□□ 2.14
VSX1-201ENST00000376707 MMP10P09238 476 aa28.44■■■□□ 2.14
VSX1-201ENST00000376707 GOLGB1Q14789 3259 aaKnown RBP28.44■■■□□ 2.14
VSX1-201ENST00000376707 ARHGEF1Q92888 912 aaKnown RBP28.43■■■□□ 2.14
VSX1-201ENST00000376707 RFC4P35249 363 aa28.42■■■□□ 2.14
VSX1-201ENST00000376707 NLGN1Q8N2Q7 840 aa28.42■■■□□ 2.14
VSX1-201ENST00000376707 COL5A3P25940 1745 aaPredicted RBP28.42■■■□□ 2.14
VSX1-201ENST00000376707 SLC52A2Q9HAB3 445 aa28.41■■■□□ 2.14
VSX1-201ENST00000376707 LGR6Q9HBX8 967 aa28.4■■■□□ 2.14
VSX1-201ENST00000376707 SCN11AQ9UI33 1791 aa28.39■■■□□ 2.14
VSX1-201ENST00000376707 CRKLP46109 303 aaKnown RBP28.39■■■□□ 2.14
VSX1-201ENST00000376707 MTHFSDQ2M296 383 aaKnown RBP28.39■■■□□ 2.14
VSX1-201ENST00000376707 RNMTO43148 476 aaKnown RBP28.38■■■□□ 2.13
VSX1-201ENST00000376707 WWC3Q9ULE0 1092 aa28.38■■■□□ 2.13
VSX1-201ENST00000376707 U2SURPO15042 1029 aaKnown RBP28.37■■■□□ 2.13
VSX1-201ENST00000376707 GYS1P13807 737 aa28.36■■■□□ 2.13
VSX1-201ENST00000376707 COL3A1P02461 1466 aaPredicted RBP28.34■■■□□ 2.13
VSX1-201ENST00000376707 MRC1P22897 1456 aa28.34■■■□□ 2.13
VSX1-201ENST00000376707 CICQ96RK0 1608 aaPredicted RBP28.33■■■□□ 2.13
VSX1-201ENST00000376707 TJP1Q07157 1748 aa28.32■■■□□ 2.12
VSX1-201ENST00000376707 SLC39A6Q13433 755 aa28.32■■■□□ 2.12
VSX1-201ENST00000376707 DNAJC10Q8IXB1 793 aa28.32■■■□□ 2.12
VSX1-201ENST00000376707 PARP3Q9Y6F1 533 aa28.32■■■□□ 2.12
VSX1-201ENST00000376707 CCDC87Q9NVE4 849 aa28.31■■■□□ 2.12
VSX1-201ENST00000376707 MYH14Q7Z406 1995 aaKnown RBP28.31■■■□□ 2.12
VSX1-201ENST00000376707 GIGYF1O75420 1035 aaPredicted RBP28.3■■■□□ 2.12
VSX1-201ENST00000376707 INTS5Q6P9B9 1019 aaKnown RBP28.3■■■□□ 2.12
VSX1-201ENST00000376707 SRP68Q9UHB9 627 aaKnown RBP28.3■■■□□ 2.12
VSX1-201ENST00000376707 C1QTNF8P60827 252 aa28.29■■■□□ 2.12
VSX1-201ENST00000376707 TGFB2P61812 414 aa28.29■■■□□ 2.12
VSX1-201ENST00000376707 CFAP53Q96M91 514 aa28.29■■■□□ 2.12
VSX1-201ENST00000376707 C4AP0C0L4 1744 aa28.29■■■□□ 2.12
VSX1-201ENST00000376707 PXDNLA1KZ92 1463 aa28.28■■■□□ 2.12
VSX1-201ENST00000376707 C10orf71Q711Q0 1435 aa28.28■■■□□ 2.12
VSX1-201ENST00000376707 USP42Q9H9J4 1324 aaKnown RBP28.28■■■□□ 2.12
VSX1-201ENST00000376707 GAS2L2Q8NHY3 880 aa28.27■■■□□ 2.12
VSX1-201ENST00000376707 ADAMTS7Q9UKP4 1686 aa28.26■■■□□ 2.12
VSX1-201ENST00000376707 ATP10DQ9P241 1426 aa28.26■■■□□ 2.11
VSX1-201ENST00000376707 KCPQ6ZWJ8 1503 aa28.25■■■□□ 2.11
VSX1-201ENST00000376707 A0A0G2JLW4 131 aa28.25■■■□□ 2.11
VSX1-201ENST00000376707 CYP19A1P11511 503 aaPredicted RBP28.25■■■□□ 2.11
VSX1-201ENST00000376707 FKBP8Q14318 412 aa28.25■■■□□ 2.11
VSX1-201ENST00000376707 GNAT3A8MTJ3 354 aa28.24■■■□□ 2.11
VSX1-201ENST00000376707 TEFQ10587 303 aa28.24■■■□□ 2.11
VSX1-201ENST00000376707 TTC5Q8N0Z6 440 aa28.24■■■□□ 2.11
VSX1-201ENST00000376707 KIF13BQ9NQT8 1826 aa28.24■■■□□ 2.11
VSX1-201ENST00000376707 ZPR1O75312 459 aa28.23■■■□□ 2.11
VSX1-201ENST00000376707 VSIG10Q8N0Z9 540 aa28.23■■■□□ 2.11
VSX1-201ENST00000376707 SOS1Q07889 1333 aaPredicted RBP28.22■■■□□ 2.11
VSX1-201ENST00000376707 BCS1LQ9Y276 419 aa28.22■■■□□ 2.11
VSX1-201ENST00000376707 VIRMAQ69YN4 1812 aaKnown RBP28.21■■■□□ 2.11
VSX1-201ENST00000376707 DPEP1P16444 411 aa28.21■■■□□ 2.11
VSX1-201ENST00000376707 IL17REQ8NFR9 667 aa28.21■■■□□ 2.11
VSX1-201ENST00000376707 NUDCQ9Y266 331 aa28.21■■■□□ 2.11
VSX1-201ENST00000376707 SENP3-EIF4A1A0A087X0R7 540 aa28.2■■■□□ 2.1
VSX1-201ENST00000376707 PRKAR2BP31323 418 aa28.2■■■□□ 2.1
VSX1-201ENST00000376707 USPL1Q5W0Q7 1092 aa28.2■■■□□ 2.1
VSX1-201ENST00000376707 ZBTB1Q9Y2K1 713 aa28.2■■■□□ 2.1
VSX1-201ENST00000376707 ADCY9O60503 1353 aa28.2■■■□□ 2.1
VSX1-201ENST00000376707 KIAA1551Q9HCM1 1747 aa28.19■■■□□ 2.1
VSX1-201ENST00000376707 DDR1Q08345 913 aa28.19■■■□□ 2.1
VSX1-201ENST00000376707 GPBP1L1Q9HC44 474 aaPredicted RBP28.19■■■□□ 2.1
VSX1-201ENST00000376707 N4BP2Q86UW6 1770 aaPredicted RBP28.19■■■□□ 2.1
VSX1-201ENST00000376707 PPP2R1AP30153 589 aa28.18■■■□□ 2.1
VSX1-201ENST00000376707 COL15A1P39059 1388 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms