RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 TMX3Q96JJ7 454 aa18.67■□□□□ 0.58
COL17A1-202ENST00000369733 F6X3S4 739 aa18.67■□□□□ 0.58
COL17A1-202ENST00000369733 SLC52A1Q9NWF4 448 aa18.67■□□□□ 0.58
COL17A1-202ENST00000369733 GOLGA6L10A6NI86 522 aa18.66■□□□□ 0.58
COL17A1-202ENST00000369733 CTAGE5O15320 804 aa18.66■□□□□ 0.58
COL17A1-202ENST00000369733 ARHGAP29Q52LW3 1261 aa18.66■□□□□ 0.58
COL17A1-202ENST00000369733 SMC5Q8IY18 1101 aa18.66■□□□□ 0.58
COL17A1-202ENST00000369733 MTMR7Q9Y216 660 aa18.66■□□□□ 0.58
COL17A1-202ENST00000369733 MAGI1Q96QZ7 1491 aaPredicted RBP18.66■□□□□ 0.58
COL17A1-202ENST00000369733 CCDC69A6NI79 296 aa18.66■□□□□ 0.58
COL17A1-202ENST00000369733 EPB41L2O43491 1005 aaKnown RBP18.66■□□□□ 0.58
COL17A1-202ENST00000369733 POLR3GO15318 223 aaPredicted RBP18.65■□□□□ 0.58
COL17A1-202ENST00000369733 ZNF530Q6P9A1 599 aaPredicted RBP18.65■□□□□ 0.58
COL17A1-202ENST00000369733 SYTL4Q96C24 671 aaPredicted RBP18.65■□□□□ 0.58
COL17A1-202ENST00000369733 CTNNA3Q9UI47 895 aa18.65■□□□□ 0.58
COL17A1-202ENST00000369733 CASQ1P31415 396 aa18.65■□□□□ 0.58
COL17A1-202ENST00000369733 PRIM1P49642 420 aaKnown RBP18.65■□□□□ 0.58
COL17A1-202ENST00000369733 IL16Q14005 1332 aa18.65■□□□□ 0.58
COL17A1-202ENST00000369733 DEF6Q9H4E7 631 aa18.65■□□□□ 0.58
COL17A1-202ENST00000369733 CT47A1Q5JQC4 288 aaPredicted RBP18.65■□□□□ 0.58
COL17A1-202ENST00000369733 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
COL17A1-202ENST00000369733 RBM42Q9BTD8 480 aaKnown RBP18.64■□□□□ 0.58
COL17A1-202ENST00000369733 KIAA0586Q9BVV6 1533 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 STIM1Q13586 685 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 GBP3Q9H0R5 595 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 USP8P40818 1118 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 HS1BP3Q53T59 392 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 GIMAP6Q6P9H5 292 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 PAXBP1Q9Y5B6 917 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 FKBP4Q02790 459 aaKnown RBP eCLIP18.64■□□□□ 0.57
COL17A1-202ENST00000369733 IQCEQ6IPM2 695 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 PTPRCP08575 1304 aa18.64■□□□□ 0.57
COL17A1-202ENST00000369733 MYL6BP14649 208 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 CEP135Q66GS9 1140 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 LRRFIP2Q9Y608 721 aaKnown RBP18.63■□□□□ 0.57
COL17A1-202ENST00000369733 ADGRF5Q8IZF2 1346 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 TRERF1Q96PN7 1200 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 IFT140Q96RY7 1462 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 GNAT3A8MTJ3 354 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 GSDMDP57764 484 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 HSP90AB2PQ58FF8 381 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 TRIM34Q9BYJ4 488 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 SDSP20132 328 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 CALRP27797 417 aaKnown RBP18.63■□□□□ 0.57
COL17A1-202ENST00000369733 HSP90AB3PQ58FF7 597 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 TFIP11Q9UBB9 837 aaKnown RBP18.63■□□□□ 0.57
COL17A1-202ENST00000369733 TCEAL9Q9UHQ7 104 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 SPG7Q9UQ90 795 aa18.63■□□□□ 0.57
COL17A1-202ENST00000369733 TOP1P11387 765 aaKnown RBP18.62■□□□□ 0.57
COL17A1-202ENST00000369733 ZNF165P49910 485 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 ASXL1Q8IXJ9 1541 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 CDK5RAP3Q96JB5 506 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 BTBD11A6QL63 1104 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 NSD2O96028 1365 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 GTF2F1P35269 517 aaKnown RBP eCLIP18.62■□□□□ 0.57
COL17A1-202ENST00000369733 STX1AQ16623 288 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 TNNQ9UQP3 1299 aa18.62■□□□□ 0.57
COL17A1-202ENST00000369733 TSHZ3Q63HK5 1081 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 BIVM-ERCC5R4GMW8 1640 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 ZSCAN22P10073 491 aaPredicted RBP18.61■□□□□ 0.57
COL17A1-202ENST00000369733 NUP133Q8WUM0 1156 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 BOLA2Q9H3K6 86 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 CNNM1Q9NRU3 951 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 FAM135AQ9P2D6 1515 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 USP48Q86UV5 1035 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 CCDC148Q8NFR7 591 aa18.61■□□□□ 0.57
COL17A1-202ENST00000369733 MBIPQ9NS73 344 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 NOL7Q9UMY1 257 aaKnown RBP18.6■□□□□ 0.57
COL17A1-202ENST00000369733 EMILIN1Q9Y6C2 1016 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 RLBP1P12271 317 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 SNW1Q13573 536 aaKnown RBP18.6■□□□□ 0.57
COL17A1-202ENST00000369733 LUC7LQ9NQ29 371 aaKnown RBP18.6■□□□□ 0.57
COL17A1-202ENST00000369733 KIF5CO60282 957 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 NACAP1Q9BZK3 213 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 CENPHQ9H3R5 247 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 CNPY2Q9Y2B0 182 aa18.6■□□□□ 0.57
COL17A1-202ENST00000369733 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 GUCY1B3Q02153 619 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 ZSCAN25Q6NSZ9 544 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 TMC6Q7Z403 805 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 FSIP1Q8NA03 581 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 ARHGAP45Q92619 1136 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 KIF14Q15058 1648 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 BMS1Q14692 1282 aaKnown RBP18.59■□□□□ 0.57
COL17A1-202ENST00000369733 IMMTQ16891 758 aaKnown RBP18.59■□□□□ 0.57
COL17A1-202ENST00000369733 TXLNBQ8N3L3 684 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 CRACR2AQ9BSW2 395 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 ERLIN2O94905 339 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 KIAA1328Q86T90 577 aa18.59■□□□□ 0.57
COL17A1-202ENST00000369733 U3KPZ7 1027 aaPredicted RBP18.59■□□□□ 0.57
COL17A1-202ENST00000369733 KDM2BQ8NHM5 1336 aa18.58■□□□□ 0.57
COL17A1-202ENST00000369733 JAKMIP3Q5VZ66 844 aa18.58■□□□□ 0.57
COL17A1-202ENST00000369733 KIF6Q6ZMV9 814 aa18.58■□□□□ 0.57
COL17A1-202ENST00000369733 NUDT16Q96DE0 195 aaKnown RBP18.58■□□□□ 0.57
COL17A1-202ENST00000369733 CCDC94Q9BW85 323 aaPredicted RBP18.58■□□□□ 0.57
COL17A1-202ENST00000369733 TTC12Q9H892 705 aaPredicted RBP18.58■□□□□ 0.57
COL17A1-202ENST00000369733 KIF4BQ2VIQ3 1234 aa18.58■□□□□ 0.56
COL17A1-202ENST00000369733 CCAR1Q8IX12 1150 aaKnown RBP18.58■□□□□ 0.56
COL17A1-202ENST00000369733 KRT222Q8N1A0 295 aa18.58■□□□□ 0.56
COL17A1-202ENST00000369733 RNF123Q5XPI4 1314 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms