RNA–Protein interactions for RNA: ENST00000361804.4

SMC3-201, Transcript of structural maintenance of chromosomes 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC3, Length 4,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-201ENST00000361804 CAVIN1Q6NZI2 390 aaKnown RBP13.09□□□□□ -0.31
SMC3-201ENST00000361804 IGSF1Q8N6C5 1336 aa13.08□□□□□ -0.31
SMC3-201ENST00000361804 DCTPP1Q9H773 170 aa13.08□□□□□ -0.31
SMC3-201ENST00000361804 C5P01031 1676 aa13.08□□□□□ -0.32
SMC3-201ENST00000361804 CEP85Q6P2H3 762 aa13.08□□□□□ -0.32
SMC3-201ENST00000361804 USP26Q9BXU7 913 aa13.08□□□□□ -0.32
SMC3-201ENST00000361804 TRIM44Q96DX7 344 aaPredicted RBP13.07□□□□□ -0.32
SMC3-201ENST00000361804 API5Q9BZZ5 524 aaKnown RBP13.07□□□□□ -0.32
SMC3-201ENST00000361804 PLPPR3Q6T4P5 718 aa13.07□□□□□ -0.32
SMC3-201ENST00000361804 SLC4A2P04920 1241 aa13.07□□□□□ -0.32
SMC3-201ENST00000361804 CIZ1Q9ULV3 898 aaPredicted RBP13.07□□□□□ -0.32
SMC3-201ENST00000361804 NSFL1CQ9UNZ2 370 aaKnown RBP13.07□□□□□ -0.32
SMC3-201ENST00000361804 EXOC6BQ9Y2D4 811 aa13.07□□□□□ -0.32
SMC3-201ENST00000361804 ARHGEF10O15013 1369 aa13.06□□□□□ -0.32
SMC3-201ENST00000361804 PXDNQ92626 1479 aa13.06□□□□□ -0.32
SMC3-201ENST00000361804 CHL1O00533 1208 aa13.06□□□□□ -0.32
SMC3-201ENST00000361804 ZBTB7CA1YPR0 619 aa13.05□□□□□ -0.32
SMC3-201ENST00000361804 SHANK3Q9BYB0 1731 aa13.05□□□□□ -0.32
SMC3-201ENST00000361804 STRCQ7RTU9 1775 aa13.05□□□□□ -0.32
SMC3-201ENST00000361804 PRPF40AO75400 957 aaKnown RBP13.05□□□□□ -0.32
SMC3-201ENST00000361804 NASPP49321 788 aaPredicted RBP13.05□□□□□ -0.32
SMC3-201ENST00000361804 CALD1Q05682 793 aaKnown RBP13.05□□□□□ -0.32
SMC3-201ENST00000361804 MTHFSDQ2M296 383 aaKnown RBP13.05□□□□□ -0.32
SMC3-201ENST00000361804 ANKRD44Q8N8A2 993 aa13.05□□□□□ -0.32
SMC3-201ENST00000361804 ZNF428Q96B54 188 aa13.05□□□□□ -0.32
SMC3-201ENST00000361804 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
SMC3-201ENST00000361804 EYA1Q99502 592 aa13.04□□□□□ -0.32
SMC3-201ENST00000361804 ZDHHC9Q9Y397 364 aa13.04□□□□□ -0.32
SMC3-201ENST00000361804 RTL1A6NKG5 1358 aa13.04□□□□□ -0.32
SMC3-201ENST00000361804 INTS3Q68E01 1043 aaKnown RBP13.03□□□□□ -0.32
SMC3-201ENST00000361804 UBE2Q2Q8WVN8 375 aa13.03□□□□□ -0.32
SMC3-201ENST00000361804 MST1RQ04912 1400 aa13.03□□□□□ -0.32
SMC3-201ENST00000361804 ADGRL3Q9HAR2 1447 aa13.02□□□□□ -0.32
SMC3-201ENST00000361804 GPT2Q8TD30 523 aa13.02□□□□□ -0.32
SMC3-201ENST00000361804 RBSNQ9H1K0 784 aa13.02□□□□□ -0.32
SMC3-201ENST00000361804 LMBRD1Q9NUN5 540 aa13.02□□□□□ -0.32
SMC3-201ENST00000361804 SCN11AQ9UI33 1791 aa13.02□□□□□ -0.32
SMC3-201ENST00000361804 RABEP1Q15276 862 aa13.02□□□□□ -0.33
SMC3-201ENST00000361804 MPNDQ8N594 471 aa13.02□□□□□ -0.33
SMC3-201ENST00000361804 PALD1Q9ULE6 856 aa13.02□□□□□ -0.33
SMC3-201ENST00000361804 ZSCAN23Q3MJ62 389 aa13.02□□□□□ -0.33
SMC3-201ENST00000361804 FLT4P35916 1363 aa13.02□□□□□ -0.33
SMC3-201ENST00000361804 PRIM1P49642 420 aaKnown RBP13.01□□□□□ -0.33
SMC3-201ENST00000361804 NUTM2GQ5VZR2 741 aa13.01□□□□□ -0.33
SMC3-201ENST00000361804 LMOD3Q0VAK6 560 aa13.01□□□□□ -0.33
SMC3-201ENST00000361804 KLHL40Q2TBA0 621 aa13.01□□□□□ -0.33
SMC3-201ENST00000361804 LARP6Q9BRS8 491 aaKnown RBP13.01□□□□□ -0.33
SMC3-201ENST00000361804 ABCA3Q99758 1704 aa13.01□□□□□ -0.33
SMC3-201ENST00000361804 GOLGA6L22H0YM25 854 aa13.01□□□□□ -0.33
SMC3-201ENST00000361804 MAP4K4O95819 1239 aaPredicted RBP13.01□□□□□ -0.33
SMC3-201ENST00000361804 TTC21AQ8NDW8 1320 aa13□□□□□ -0.33
SMC3-201ENST00000361804 SKOR2Q2VWA4 1001 aaPredicted RBP13□□□□□ -0.33
SMC3-201ENST00000361804 RNF214Q8ND24 703 aa13□□□□□ -0.33
SMC3-201ENST00000361804 CHMP4BQ9H444 224 aaKnown RBP13□□□□□ -0.33
SMC3-201ENST00000361804 HOXC9P31274 260 aa13□□□□□ -0.33
SMC3-201ENST00000361804 NEK4P51957 841 aa13□□□□□ -0.33
SMC3-201ENST00000361804 GDPD2Q9HCC8 539 aa13□□□□□ -0.33
SMC3-201ENST00000361804 IL25Q9H293 177 aa13□□□□□ -0.33
SMC3-201ENST00000361804 PNMA6EA0A0J9YXQ4 647 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 UNC5CLQ8IV45 518 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 UPF3BQ9BZI7 483 aaKnown RBP12.99□□□□□ -0.33
SMC3-201ENST00000361804 CEMIPQ8WUJ3 1361 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 KIAA0232Q92628 1395 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 RILPL2Q969X0 211 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 PLEKHG5O94827 1062 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 CYP2E1P05181 493 aaPredicted RBP12.99□□□□□ -0.33
SMC3-201ENST00000361804 TSPYL4Q9UJ04 414 aa12.99□□□□□ -0.33
SMC3-201ENST00000361804 GOLGB1Q14789 3259 aaKnown RBP12.99□□□□□ -0.33
SMC3-201ENST00000361804 SYCE3A1L190 88 aa12.98□□□□□ -0.33
SMC3-201ENST00000361804 PDE1AP54750 535 aa12.98□□□□□ -0.33
SMC3-201ENST00000361804 IL17REQ8NFR9 667 aa12.98□□□□□ -0.33
SMC3-201ENST00000361804 TMEM63CQ9P1W3 806 aa12.98□□□□□ -0.33
SMC3-201ENST00000361804 RPAP2Q8IXW5 612 aaPredicted RBP12.98□□□□□ -0.33
SMC3-201ENST00000361804 IL1RAPL2Q9NP60 686 aa12.98□□□□□ -0.33
SMC3-201ENST00000361804 PKD1L3Q7Z443 1732 aa12.97□□□□□ -0.33
SMC3-201ENST00000361804 TRIM6-TRIM34B2RNG4 842 aa12.97□□□□□ -0.33
SMC3-201ENST00000361804 LTV1Q96GA3 475 aaPredicted RBP12.97□□□□□ -0.33
SMC3-201ENST00000361804 THEMISQ8N1K5 641 aaPredicted RBP12.96□□□□□ -0.33
SMC3-201ENST00000361804 ARID3AQ99856 593 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 KIF1AQ12756 1690 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 ERC2O15083 957 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 ST18O60284 1047 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 TMX3Q96JJ7 454 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 ANO2Q9NQ90 1003 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 EP400Q96L91 3159 aa12.96□□□□□ -0.33
SMC3-201ENST00000361804 XPCQ01831 940 aaPredicted RBP12.96□□□□□ -0.34
SMC3-201ENST00000361804 KIAA1211Q6ZU35 1233 aa12.96□□□□□ -0.34
SMC3-201ENST00000361804 HSP90AA2PQ14568 343 aaPredicted RBP12.95□□□□□ -0.34
SMC3-201ENST00000361804 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.95□□□□□ -0.34
SMC3-201ENST00000361804 RBM10P98175 930 aaKnown RBP12.95□□□□□ -0.34
SMC3-201ENST00000361804 FKBP5Q13451 457 aaPredicted RBP12.95□□□□□ -0.34
SMC3-201ENST00000361804 NUCB2P80303 420 aa12.95□□□□□ -0.34
SMC3-201ENST00000361804 AXIN2Q9Y2T1 843 aa12.95□□□□□ -0.34
SMC3-201ENST00000361804 NPHP4O75161 1426 aaPredicted RBP12.95□□□□□ -0.34
SMC3-201ENST00000361804 CCDC173Q0VFZ6 552 aa12.94□□□□□ -0.34
SMC3-201ENST00000361804 CASC1Q6TDU7 716 aa12.94□□□□□ -0.34
SMC3-201ENST00000361804 NUTM1Q86Y26 1132 aa12.94□□□□□ -0.34
SMC3-201ENST00000361804 ESF1Q9H501 851 aaKnown RBP12.94□□□□□ -0.34
SMC3-201ENST00000361804 USHBP1Q8N6Y0 703 aa12.94□□□□□ -0.34
SMC3-201ENST00000361804 SALL3Q9BXA9 1300 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms