RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TRMT1Q9NXH9 659 aaKnown RBP8.67□□□□□ -1.02
VPS13A-202ENST00000357409 CIZ1Q9ULV3 898 aaPredicted RBP8.67□□□□□ -1.02
VPS13A-202ENST00000357409 CCDC173Q0VFZ6 552 aa8.67□□□□□ -1.02
VPS13A-202ENST00000357409 GNAT3A8MTJ3 354 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 EIF6P56537 245 aaKnown RBP8.66□□□□□ -1.02
VPS13A-202ENST00000357409 CKAP2LQ8IYA6 745 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 TFCP2L1Q9NZI6 479 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 ZFP91Q96JP5 570 aaPredicted RBP8.66□□□□□ -1.02
VPS13A-202ENST00000357409 GPS2Q13227 327 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 PDRG1Q9NUG6 133 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 GOLIM4O00461 696 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 ZKSCAN3Q9BRR0 538 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 TSPYL1Q9H0U9 437 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 CYP46A1Q9Y6A2 500 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 GNAI3P08754 354 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 ERCC3P19447 782 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 NACAP1Q9BZK3 213 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 CASTP20810 708 aaKnown RBP8.66□□□□□ -1.02
VPS13A-202ENST00000357409 PRPF40BQ6NWY9 871 aaKnown RBP8.66□□□□□ -1.02
VPS13A-202ENST00000357409 BLOC1S2Q6QNY1 142 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 GINS2Q9Y248 185 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 TCERG1LQ5VWI1 586 aa8.66□□□□□ -1.02
VPS13A-202ENST00000357409 ZNF213O14771 459 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 C20orf194Q5TEA3 1177 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 BRPF3Q9ULD4 1205 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 PROCA1Q8NCQ7 364 aaPredicted RBP8.65□□□□□ -1.02
VPS13A-202ENST00000357409 H0YHG0 523 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 ATP6V1AP38606 617 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS13A-202ENST00000357409 STX8Q9UNK0 236 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 MSL1Q68DK7 614 aa8.65□□□□□ -1.02
VPS13A-202ENST00000357409 MAP3K2Q9Y2U5 619 aa8.65□□□□□ -1.03
VPS13A-202ENST00000357409 WASHC2AQ641Q2 1341 aa8.65□□□□□ -1.03
VPS13A-202ENST00000357409 COMMD10Q9Y6G5 202 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 IFIT3O14879 490 aaKnown RBP8.64□□□□□ -1.03
VPS13A-202ENST00000357409 EIF5P55010 431 aaKnown RBP8.64□□□□□ -1.03
VPS13A-202ENST00000357409 SAP30BPQ9UHR5 308 aaKnown RBP8.64□□□□□ -1.03
VPS13A-202ENST00000357409 NSFL1CQ9UNZ2 370 aaKnown RBP8.64□□□□□ -1.03
VPS13A-202ENST00000357409 NAPBQ9H115 298 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 GJC1P36383 396 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 TRIM22Q8IYM9 498 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 MROH2BQ7Z745 1585 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 ERICH4A6NGS2 130 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 TSPY2A6NKD2 308 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 IDEP14735 1019 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 TNMDQ9H2S6 317 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 ZSWIM4Q9H7M6 989 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 RBM25P49756 843 aaKnown RBP8.64□□□□□ -1.03
VPS13A-202ENST00000357409 NECAB1Q8N987 351 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 MIGA1Q8NAN2 632 aa8.64□□□□□ -1.03
VPS13A-202ENST00000357409 SF3A3Q12874 501 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 PRPF4BQ13523 1007 aaKnown RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 NINLQ9Y2I6 1382 aa8.63□□□□□ -1.03
VPS13A-202ENST00000357409 UBE4AQ14139 1066 aa8.63□□□□□ -1.03
VPS13A-202ENST00000357409 KRT24Q2M2I5 525 aa8.63□□□□□ -1.03
VPS13A-202ENST00000357409 EAPPQ56P03 285 aaPredicted RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 DDX46Q7L014 1031 aaKnown RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 RTEL1-TNFRSF6BF6WH68 1400 aa8.63□□□□□ -1.03
VPS13A-202ENST00000357409 CT47B1P0C2W7 299 aaPredicted RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 NASPP49321 788 aaPredicted RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 PRDM10Q9NQV6 1147 aa8.63□□□□□ -1.03
VPS13A-202ENST00000357409 RNF216Q9NWF9 866 aaPredicted RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 PA2G4Q9UQ80 394 aaKnown RBP8.63□□□□□ -1.03
VPS13A-202ENST00000357409 NUCB2P80303 420 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 KCNQ4P56696 695 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 PPFIBP1Q86W92 1011 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 CEP57L1Q8IYX8 460 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 PRC1O43663 620 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 ARL1P40616 181 aaPredicted RBP8.62□□□□□ -1.03
VPS13A-202ENST00000357409 MKRN3Q13064 507 aaKnown RBP8.62□□□□□ -1.03
VPS13A-202ENST00000357409 CCDC178Q5BJE1 867 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 FAM43AQ8N2R8 423 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 IFIT5Q13325 482 aaKnown RBP8.62□□□□□ -1.03
VPS13A-202ENST00000357409 TMCO5BA8MYB1 307 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 CHD1LQ86WJ1 897 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 SPATA32Q96LK8 384 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 GOLGA6L10A0A0M3HER8 536 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 GOLGA6L10A6NI86 522 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 SMARCE1Q969G3 411 aa8.62□□□□□ -1.03
VPS13A-202ENST00000357409 TMEM110-MUSTN1A8MSY1 372 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 KIAA1328Q86T90 577 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 TNNQ9UQP3 1299 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 VPS8Q8N3P4 1428 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 ANAPC15P60006 121 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 CFAP100Q494V2 611 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 TDRD12Q587J7 1177 aaKnown RBP8.61□□□□□ -1.03
VPS13A-202ENST00000357409 NIP7Q9Y221 180 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS13A-202ENST00000357409 TMCO4Q5TGY1 634 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 TSPY26PQ9H489 355 aa8.61□□□□□ -1.03
VPS13A-202ENST00000357409 HARSP12081 509 aaKnown RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 SKOR2Q2VWA4 1001 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 CACNA2D4Q7Z3S7 1137 aa8.6□□□□□ -1.03
VPS13A-202ENST00000357409 ZNF692Q9BU19 519 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 IRX5P78411 483 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 BMP2KQ9NSY1 1161 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 AFMP43652 599 aa8.6□□□□□ -1.03
VPS13A-202ENST00000357409 TMPOP42166 694 aaKnown RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 IMMTQ16891 758 aaKnown RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 HSP90B2PQ58FF3 399 aa8.6□□□□□ -1.03
VPS13A-202ENST00000357409 SEC63Q9UGP8 760 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms