RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 RIPK4P57078 832 aa27.45■■□□□ 1.99
SMARCB1-202ENST00000344921 DLG5Q8TDM6 1919 aa27.45■■□□□ 1.98
SMARCB1-202ENST00000344921 DCTN1Q14203 1278 aa27.44■■□□□ 1.98
SMARCB1-202ENST00000344921 FAM9BQ8IZU0 186 aa27.44■■□□□ 1.98
SMARCB1-202ENST00000344921 RRP7AQ9Y3A4 280 aaKnown RBP27.44■■□□□ 1.98
SMARCB1-202ENST00000344921 RREB1Q92766 1687 aa27.44■■□□□ 1.98
SMARCB1-202ENST00000344921 TMPOP42166 694 aaKnown RBP27.44■■□□□ 1.98
SMARCB1-202ENST00000344921 ATG3Q9NT62 314 aa27.44■■□□□ 1.98
SMARCB1-202ENST00000344921 ADAMTS7Q9UKP4 1686 aa27.43■■□□□ 1.98
SMARCB1-202ENST00000344921 CCNL1Q9UK58 526 aaPredicted RBP27.43■■□□□ 1.98
SMARCB1-202ENST00000344921 KCNQ4P56696 695 aa27.42■■□□□ 1.98
SMARCB1-202ENST00000344921 SLC27A3Q5K4L6 730 aa27.42■■□□□ 1.98
SMARCB1-202ENST00000344921 NBPF14Q5TI25 921 aa27.41■■□□□ 1.98
SMARCB1-202ENST00000344921 LY75O60449 1722 aa27.41■■□□□ 1.98
SMARCB1-202ENST00000344921 CEMIPQ8WUJ3 1361 aa27.41■■□□□ 1.98
SMARCB1-202ENST00000344921 MRC1P22897 1456 aa27.4■■□□□ 1.98
SMARCB1-202ENST00000344921 RBM42Q9BTD8 480 aaKnown RBP27.4■■□□□ 1.98
SMARCB1-202ENST00000344921 LRRC4BQ9NT99 713 aa27.4■■□□□ 1.98
SMARCB1-202ENST00000344921 NUP188Q5SRE5 1749 aa27.4■■□□□ 1.98
SMARCB1-202ENST00000344921 CCER2I3L3R5 266 aa27.39■■□□□ 1.98
SMARCB1-202ENST00000344921 APAF1O14727 1248 aa27.39■■□□□ 1.98
SMARCB1-202ENST00000344921 LMOD3Q0VAK6 560 aa27.38■■□□□ 1.97
SMARCB1-202ENST00000344921 MIER1Q8N108 512 aa27.38■■□□□ 1.97
SMARCB1-202ENST00000344921 SLC39A6Q13433 755 aa27.38■■□□□ 1.97
SMARCB1-202ENST00000344921 LOC102724428A0A0B4J2F2 783 aa27.37■■□□□ 1.97
SMARCB1-202ENST00000344921 PTCD1O75127 700 aaKnown RBP27.37■■□□□ 1.97
SMARCB1-202ENST00000344921 SIK1P57059 783 aa27.37■■□□□ 1.97
SMARCB1-202ENST00000344921 TTC5Q8N0Z6 440 aa27.36■■□□□ 1.97
SMARCB1-202ENST00000344921 BTBD11A6QL63 1104 aa27.36■■□□□ 1.97
SMARCB1-202ENST00000344921 ATP6V1AP38606 617 aa27.36■■□□□ 1.97
SMARCB1-202ENST00000344921 THUMPD2Q9BTF0 503 aaKnown RBP27.36■■□□□ 1.97
SMARCB1-202ENST00000344921 SIPA1L3O60292 1781 aaPredicted RBP27.33■■□□□ 1.97
SMARCB1-202ENST00000344921 SENP3-EIF4A1A0A087X0R7 540 aa27.33■■□□□ 1.96
SMARCB1-202ENST00000344921 TAF7Q15545 349 aaPredicted RBP27.33■■□□□ 1.96
SMARCB1-202ENST00000344921 STK32BQ9NY57 414 aa27.33■■□□□ 1.96
SMARCB1-202ENST00000344921 HMGB2P26583 209 aaKnown RBP27.32■■□□□ 1.96
SMARCB1-202ENST00000344921 R3HDM1Q15032 1099 aaKnown RBP27.32■■□□□ 1.96
SMARCB1-202ENST00000344921 PSDA5PKW4 1024 aaPredicted RBP27.31■■□□□ 1.96
SMARCB1-202ENST00000344921 ZNF790Q6PG37 636 aa27.31■■□□□ 1.96
SMARCB1-202ENST00000344921 ANO8Q9HCE9 1232 aaPredicted RBP27.31■■□□□ 1.96
SMARCB1-202ENST00000344921 TRIM35Q9UPQ4 493 aa27.3■■□□□ 1.96
SMARCB1-202ENST00000344921 PAPPAQ13219 1627 aa27.29■■□□□ 1.96
SMARCB1-202ENST00000344921 SLC15A2Q16348 729 aa27.28■■□□□ 1.96
SMARCB1-202ENST00000344921 MIS18AQ9NYP9 233 aa27.28■■□□□ 1.96
SMARCB1-202ENST00000344921 C5P01031 1676 aa27.28■■□□□ 1.96
SMARCB1-202ENST00000344921 SLC4A9Q96Q91 983 aa27.27■■□□□ 1.96
SMARCB1-202ENST00000344921 ITPK1Q13572 414 aa27.27■■□□□ 1.96
SMARCB1-202ENST00000344921 ZNF827Q17R98 1081 aa27.26■■□□□ 1.95
SMARCB1-202ENST00000344921 TAF1LQ8IZX4 1826 aa27.25■■□□□ 1.95
SMARCB1-202ENST00000344921 KCNQ3O43525 872 aa27.25■■□□□ 1.95
SMARCB1-202ENST00000344921 TFCP2L1Q9NZI6 479 aa27.25■■□□□ 1.95
SMARCB1-202ENST00000344921 LINC00116Q8NCU8 138 aa27.24■■□□□ 1.95
SMARCB1-202ENST00000344921 ZNF496Q96IT1 587 aaPredicted RBP27.24■■□□□ 1.95
SMARCB1-202ENST00000344921 SALL2Q9Y467 1007 aaPredicted RBP27.24■■□□□ 1.95
SMARCB1-202ENST00000344921 FMNL2Q96PY5 1086 aa27.24■■□□□ 1.95
SMARCB1-202ENST00000344921 LAS1LQ9Y4W2 734 aaKnown RBP27.24■■□□□ 1.95
SMARCB1-202ENST00000344921 KCPQ6ZWJ8 1503 aa27.23■■□□□ 1.95
SMARCB1-202ENST00000344921 AKT1S1Q96B36 256 aa27.23■■□□□ 1.95
SMARCB1-202ENST00000344921 AK7Q96M32 723 aa27.23■■□□□ 1.95
SMARCB1-202ENST00000344921 TSPYL4Q9UJ04 414 aa27.22■■□□□ 1.95
SMARCB1-202ENST00000344921 UBR2Q8IWV8 1755 aa27.22■■□□□ 1.95
SMARCB1-202ENST00000344921 ZNF831Q5JPB2 1677 aa27.21■■□□□ 1.95
SMARCB1-202ENST00000344921 C4BP0C0L5 1744 aa27.21■■□□□ 1.95
SMARCB1-202ENST00000344921 DNAJC10Q8IXB1 793 aa27.21■■□□□ 1.95
SMARCB1-202ENST00000344921 VSIG10Q8N0Z9 540 aa27.21■■□□□ 1.95
SMARCB1-202ENST00000344921 HEG1Q9ULI3 1381 aa27.2■■□□□ 1.94
SMARCB1-202ENST00000344921 CALD1Q05682 793 aaKnown RBP27.19■■□□□ 1.94
SMARCB1-202ENST00000344921 CCDC27Q2M243 656 aa27.17■■□□□ 1.94
SMARCB1-202ENST00000344921 TJP1Q07157 1748 aa27.17■■□□□ 1.94
SMARCB1-202ENST00000344921 GNPATO15228 680 aa27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 WWC1Q8IX03 1113 aa27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 TEX13AQ9BXU3 409 aaPredicted RBP27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 BABAM1Q9NWV8 329 aa27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 COL5A3P25940 1745 aaPredicted RBP27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 KDM3BQ7LBC6 1761 aa27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 CRKLP46109 303 aaKnown RBP27.16■■□□□ 1.94
SMARCB1-202ENST00000344921 MSH5O43196 834 aa27.15■■□□□ 1.94
SMARCB1-202ENST00000344921 STARD3NLO95772 234 aa27.15■■□□□ 1.94
SMARCB1-202ENST00000344921 PHF14O94880 888 aa27.14■■□□□ 1.94
SMARCB1-202ENST00000344921 SNRPA1P09661 255 aaKnown RBP27.14■■□□□ 1.94
SMARCB1-202ENST00000344921 NCBP3Q53F19 620 aaKnown RBP27.14■■□□□ 1.94
SMARCB1-202ENST00000344921 RC3H1Q5TC82 1133 aaKnown RBP27.14■■□□□ 1.94
SMARCB1-202ENST00000344921 CFAP44Q96MT7 982 aa27.14■■□□□ 1.94
SMARCB1-202ENST00000344921 CNTNAP4Q9C0A0 1308 aa27.14■■□□□ 1.94
SMARCB1-202ENST00000344921 CHL1O00533 1208 aa27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 EIF4A1P60842 406 aaKnown RBP27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 PDGFDQ9GZP0 370 aaPredicted RBP27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 CICQ96RK0 1608 aaPredicted RBP27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 PNPLA7Q6ZV29 1317 aa27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 CYP19A1P11511 503 aaPredicted RBP27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 RTCBQ9Y3I0 505 aaKnown RBP27.13■■□□□ 1.93
SMARCB1-202ENST00000344921 TUBGCP6Q96RT7 1819 aa27.12■■□□□ 1.93
SMARCB1-202ENST00000344921 GNAI1P63096 354 aa27.12■■□□□ 1.93
SMARCB1-202ENST00000344921 NGEFQ8N5V2 710 aa27.11■■□□□ 1.93
SMARCB1-202ENST00000344921 FLAD1Q8NFF5 587 aa27.11■■□□□ 1.93
SMARCB1-202ENST00000344921 CCDC87Q9NVE4 849 aa27.11■■□□□ 1.93
SMARCB1-202ENST00000344921 IFT57Q9NWB7 429 aa27.11■■□□□ 1.93
SMARCB1-202ENST00000344921 PRAMEF22A3QJZ6 481 aa27.1■■□□□ 1.93
SMARCB1-202ENST00000344921 SMIM5Q71RC9 77 aa27.1■■□□□ 1.93
SMARCB1-202ENST00000344921 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms