RNA–Protein interactions for RNA: ENST00000340660.10

ATXN3-201, Transcript of ataxin 3, humanhuman

TSL 1 (best) BASIC

Gene ATXN3, Length 1,205 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-201ENST00000340660 C10orf71Q711Q0 1435 aa17.28■□□□□ 0.36
ATXN3-201ENST00000340660 CCDC85CA6NKD9 419 aa17.27■□□□□ 0.36
ATXN3-201ENST00000340660 SMC1BQ8NDV3 1235 aa17.27■□□□□ 0.36
ATXN3-201ENST00000340660 NGDNQ8NEJ9 315 aaKnown RBP17.27■□□□□ 0.36
ATXN3-201ENST00000340660 HIRIP3Q9BW71 556 aaPredicted RBP17.27■□□□□ 0.36
ATXN3-201ENST00000340660 PDE4DIPQ5VU43 2346 aa17.26■□□□□ 0.35
ATXN3-201ENST00000340660 BTAF1O14981 1849 aa17.26■□□□□ 0.35
ATXN3-201ENST00000340660 PPP1R37O75864 691 aa17.26■□□□□ 0.35
ATXN3-201ENST00000340660 ZNF710Q8N1W2 664 aa17.26■□□□□ 0.35
ATXN3-201ENST00000340660 USP6P35125 1406 aa17.25■□□□□ 0.35
ATXN3-201ENST00000340660 HOXB1P14653 301 aaPredicted RBP17.24■□□□□ 0.35
ATXN3-201ENST00000340660 CTCFP49711 727 aaPredicted RBP17.24■□□□□ 0.35
ATXN3-201ENST00000340660 KCNQ4P56696 695 aa17.24■□□□□ 0.35
ATXN3-201ENST00000340660 TOM1L2Q6ZVM7 507 aa17.24■□□□□ 0.35
ATXN3-201ENST00000340660 COL23A1Q86Y22 540 aaPredicted RBP17.24■□□□□ 0.35
ATXN3-201ENST00000340660 CDCA7Q9BWT1 371 aaPredicted RBP17.24■□□□□ 0.35
ATXN3-201ENST00000340660 KCPQ6ZWJ8 1503 aa17.24■□□□□ 0.35
ATXN3-201ENST00000340660 POTEB3A0JP26 581 aa17.23■□□□□ 0.35
ATXN3-201ENST00000340660 POTEBQ6S5H4 581 aa17.23■□□□□ 0.35
ATXN3-201ENST00000340660 PRAM1Q96QH2 718 aa17.23■□□□□ 0.35
ATXN3-201ENST00000340660 SLC27A3Q5K4L6 730 aa17.22■□□□□ 0.35
ATXN3-201ENST00000340660 RRAGCQ9HB90 399 aa17.22■□□□□ 0.35
ATXN3-201ENST00000340660 PXDNLA1KZ92 1463 aa17.22■□□□□ 0.35
ATXN3-201ENST00000340660 LBX1P52954 281 aa17.21■□□□□ 0.35
ATXN3-201ENST00000340660 TRPM1Q7Z4N2 1603 aa17.21■□□□□ 0.35
ATXN3-201ENST00000340660 FAM205CA6NFA0 338 aa17.2■□□□□ 0.34
ATXN3-201ENST00000340660 HS3ST6Q96QI5 342 aa17.2■□□□□ 0.34
ATXN3-201ENST00000340660 EXOC5O00471 708 aa17.19■□□□□ 0.34
ATXN3-201ENST00000340660 RIMBP2O15034 1052 aa17.19■□□□□ 0.34
ATXN3-201ENST00000340660 FAM50AQ14320 339 aaKnown RBP17.18■□□□□ 0.34
ATXN3-201ENST00000340660 MKRN1Q9UHC7 482 aaKnown RBP17.18■□□□□ 0.34
ATXN3-201ENST00000340660 C2orf72A6NCS6 295 aa17.17■□□□□ 0.34
ATXN3-201ENST00000340660 PIK3C2GO75747 1445 aa17.16■□□□□ 0.34
ATXN3-201ENST00000340660 GCP02774 474 aa17.16■□□□□ 0.34
ATXN3-201ENST00000340660 NKX1-1Q15270 411 aaPredicted RBP17.16■□□□□ 0.34
ATXN3-201ENST00000340660 ZSWIM6Q9HCJ5 1215 aa17.16■□□□□ 0.34
ATXN3-201ENST00000340660 KDM2BQ8NHM5 1336 aa17.16■□□□□ 0.34
ATXN3-201ENST00000340660 PLEKHG2Q9H7P9 1386 aa17.15■□□□□ 0.34
ATXN3-201ENST00000340660 AIDAQ96BJ3 306 aa17.15■□□□□ 0.34
ATXN3-201ENST00000340660 WDR17Q8IZU2 1322 aa17.15■□□□□ 0.34
ATXN3-201ENST00000340660 TNRC6CQ9HCJ0 1690 aaKnown RBP17.14■□□□□ 0.33
ATXN3-201ENST00000340660 C9orf131Q5VYM1 1079 aa17.14■□□□□ 0.33
ATXN3-201ENST00000340660 ROCK1Q13464 1354 aa17.14■□□□□ 0.33
ATXN3-201ENST00000340660 ZBTB7CA1YPR0 619 aa17.13■□□□□ 0.33
ATXN3-201ENST00000340660 GPR153Q6NV75 609 aa17.13■□□□□ 0.33
ATXN3-201ENST00000340660 PIK3C2AO00443 1686 aa17.13■□□□□ 0.33
ATXN3-201ENST00000340660 EIF3AQ14152 1382 aaKnown RBP17.13■□□□□ 0.33
ATXN3-201ENST00000340660 ARHGAP27Q6ZUM4 889 aa17.12■□□□□ 0.33
ATXN3-201ENST00000340660 ABCC6O95255 1503 aa17.11■□□□□ 0.33
ATXN3-201ENST00000340660 PKD1L3Q7Z443 1732 aa17.11■□□□□ 0.33
ATXN3-201ENST00000340660 HSPA8P11142 646 aaKnown RBP17.11■□□□□ 0.33
ATXN3-201ENST00000340660 ABTB2Q8N961 1025 aa17.11■□□□□ 0.33
ATXN3-201ENST00000340660 AXIN2Q9Y2T1 843 aa17.1■□□□□ 0.33
ATXN3-201ENST00000340660 CARD10Q9BWT7 1032 aa17.09■□□□□ 0.33
ATXN3-201ENST00000340660 WBP1LQ9NX94 342 aa17.09■□□□□ 0.33
ATXN3-201ENST00000340660 POGKQ9P215 609 aa17.09■□□□□ 0.33
ATXN3-201ENST00000340660 COL18A1P39060 1754 aa17.09■□□□□ 0.33
ATXN3-201ENST00000340660 QRICH2Q9H0J4 1663 aa17.08■□□□□ 0.32
ATXN3-201ENST00000340660 WASLO00401 505 aaPredicted RBP17.08■□□□□ 0.32
ATXN3-201ENST00000340660 BCS1LQ9Y276 419 aa17.08■□□□□ 0.32
ATXN3-201ENST00000340660 CNTNAP1P78357 1384 aa17.07■□□□□ 0.32
ATXN3-201ENST00000340660 MINK1Q8N4C8 1332 aaPredicted RBP17.07■□□□□ 0.32
ATXN3-201ENST00000340660 PRPF38BQ5VTL8 546 aaKnown RBP17.07■□□□□ 0.32
ATXN3-201ENST00000340660 CFAP44Q96MT7 982 aa17.06■□□□□ 0.32
ATXN3-201ENST00000340660 KRTAP3-3Q9BYR6 98 aa17.06■□□□□ 0.32
ATXN3-201ENST00000340660 KRTAP3-2Q9BYR7 98 aa17.06■□□□□ 0.32
ATXN3-201ENST00000340660 KIAA1551Q9HCM1 1747 aa17.05■□□□□ 0.32
ATXN3-201ENST00000340660 TMC2Q8TDI7 906 aa17.05■□□□□ 0.32
ATXN3-201ENST00000340660 PPIP5K1Q6PFW1 1433 aa17.04■□□□□ 0.32
ATXN3-201ENST00000340660 LY75O60449 1722 aa17.04■□□□□ 0.32
ATXN3-201ENST00000340660 POLR3AO14802 1390 aaPredicted RBP17.04■□□□□ 0.32
ATXN3-201ENST00000340660 ERBB3P21860 1342 aa17.04■□□□□ 0.32
ATXN3-201ENST00000340660 ARSIQ5FYB1 569 aa17.04■□□□□ 0.32
ATXN3-201ENST00000340660 C14orf93Q9H972 538 aaKnown RBP17.04■□□□□ 0.32
ATXN3-201ENST00000340660 NLRP13Q86W25 1043 aa17.03■□□□□ 0.32
ATXN3-201ENST00000340660 ITSN1Q15811 1721 aa17.02■□□□□ 0.32
ATXN3-201ENST00000340660 ACEP12821 1306 aa17.01■□□□□ 0.31
ATXN3-201ENST00000340660 USP54Q70EL1 1684 aa17.01■□□□□ 0.31
ATXN3-201ENST00000340660 VEGFBP49765 207 aa17.01■□□□□ 0.31
ATXN3-201ENST00000340660 RGL3Q3MIN7 710 aa17.01■□□□□ 0.31
ATXN3-201ENST00000340660 SMIM5Q71RC9 77 aa17.01■□□□□ 0.31
ATXN3-201ENST00000340660 CCNL1Q9UK58 526 aaPredicted RBP17.01■□□□□ 0.31
ATXN3-201ENST00000340660 CFAP70Q5T0N1 1121 aa17■□□□□ 0.31
ATXN3-201ENST00000340660 KHSRPQ92945 711 aaKnown RBP eCLIP17■□□□□ 0.31
ATXN3-201ENST00000340660 NUDT16Q96DE0 195 aaKnown RBP17■□□□□ 0.31
ATXN3-201ENST00000340660 RNF181Q9P0P0 153 aa17■□□□□ 0.31
ATXN3-201ENST00000340660 CCDC7Q96M83 1385 aa17■□□□□ 0.31
ATXN3-201ENST00000340660 CSB-PGBD3P0DP91 1061 aa16.99■□□□□ 0.31
ATXN3-201ENST00000340660 VARS2Q5ST30 1063 aaKnown RBP16.99■□□□□ 0.31
ATXN3-201ENST00000340660 SPNS2Q8IVW8 549 aa16.99■□□□□ 0.31
ATXN3-201ENST00000340660 KAT6BQ8WYB5 2073 aa16.99■□□□□ 0.31
ATXN3-201ENST00000340660 N4BP2Q86UW6 1770 aaPredicted RBP16.99■□□□□ 0.31
ATXN3-201ENST00000340660 SPATA31E1Q6ZUB1 1445 aa16.98■□□□□ 0.31
ATXN3-201ENST00000340660 SLIT3O75094 1523 aa16.98■□□□□ 0.31
ATXN3-201ENST00000340660 A0A0G2JLW4 131 aa16.97■□□□□ 0.31
ATXN3-201ENST00000340660 VEGFAP15692 232 aaPredicted RBP16.97■□□□□ 0.31
ATXN3-201ENST00000340660 VIRMAQ69YN4 1812 aaKnown RBP16.97■□□□□ 0.31
ATXN3-201ENST00000340660 NSD2O96028 1365 aa16.97■□□□□ 0.31
ATXN3-201ENST00000340660 AMIGO3Q86WK7 504 aa16.96■□□□□ 0.31
ATXN3-201ENST00000340660 RYDENQ9NUL5 291 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms