RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 AEBP2Q6ZN18 517 aaPredicted RBP6.41□□□□□ -1.38
PTPRB-202ENST00000334414 FERMT1Q9BQL6 677 aa6.41□□□□□ -1.38
PTPRB-202ENST00000334414 CEP83Q9Y592 693 aa6.41□□□□□ -1.38
PTPRB-202ENST00000334414 LNPKQ9C0E8 428 aa6.41□□□□□ -1.38
PTPRB-202ENST00000334414 GNL3LQ9NVN8 582 aaKnown RBP6.41□□□□□ -1.38
PTPRB-202ENST00000334414 NBPF11Q86T75 865 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 ANKRD30BQ9BXX2 1392 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 NUTM1Q86Y26 1132 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 IFT74Q96LB3 600 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 CCDC69A6NI79 296 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 FERP16591 822 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 CFAP100Q494V2 611 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 KRI1Q8N9T8 703 aaKnown RBP6.4□□□□□ -1.38
PTPRB-202ENST00000334414 PNISRQ8TF01 805 aaKnown RBP6.4□□□□□ -1.38
PTPRB-202ENST00000334414 ARHGAP25P42331 645 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 PAK3O75914 559 aaPredicted RBP6.4□□□□□ -1.38
PTPRB-202ENST00000334414 LMAN1P49257 510 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 PDRG1Q9NUG6 133 aa6.4□□□□□ -1.38
PTPRB-202ENST00000334414 APAF1O14727 1248 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 NDC80O14777 642 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 EIF5P55010 431 aaKnown RBP6.4□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC121Q6ZUS5 278 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.4□□□□□ -1.39
PTPRB-202ENST00000334414 GPRASP1Q5JY77 1395 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 NGDNQ8NEJ9 315 aaKnown RBP6.4□□□□□ -1.39
PTPRB-202ENST00000334414 GTF2F1P35269 517 aaKnown RBP eCLIP6.4□□□□□ -1.39
PTPRB-202ENST00000334414 RNF187Q5TA31 235 aaPredicted RBP6.4□□□□□ -1.39
PTPRB-202ENST00000334414 PDZRN3Q9UPQ7 1066 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 RAB11FIP3O75154 756 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC6Q16204 474 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 CROCCP2Q86T23 111 aa6.4□□□□□ -1.39
PTPRB-202ENST00000334414 TACC1O75410 805 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC27Q2M243 656 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 ZNF330Q9Y3S2 320 aaPredicted RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC196A0A1B0GTZ2 297 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 ATP5DP30049 168 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 TSGA10Q9BZW7 698 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 GAS2L2Q8NHY3 880 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC110Q8TBZ0 833 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 TANGO6Q9C0B7 1094 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 NCAPD3P42695 1498 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 NSD2O96028 1365 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC155Q8N6L0 562 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CAMSAP2Q08AD1 1489 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 UBE2HP62256 183 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 GTF2E1P29083 439 aaPredicted RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 BRPF1P55201 1214 aaPredicted RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 RPAP2Q8IXW5 612 aaPredicted RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 ZNF287Q9HBT7 754 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 LUC7L2Q9Y383 392 aaKnown RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 DDX23Q9BUQ8 820 aaKnown RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC9Q9Y3X0 531 aaKnown RBP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CECR2Q9BXF3 1484 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 ITSN2Q9NZM3 1697 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 EBAG9O00559 213 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 LRRC27Q9C0I9 530 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 CCDC158Q5M9N0 1113 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.39□□□□□ -1.39
PTPRB-202ENST00000334414 PANK1Q8TE04 598 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 RAB34Q9BZG1 259 aa6.39□□□□□ -1.39
PTPRB-202ENST00000334414 LRSAM1Q6UWE0 723 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 RRP7AQ9Y3A4 280 aaKnown RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ZBTB17Q13105 803 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ALDH1L2Q3SY69 923 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ARFGAP2Q8N6H7 521 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 THOC2Q8NI27 1593 aaKnown RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 MKRN1Q9UHC7 482 aaKnown RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 FBXW7Q969H0 707 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 NAP1L3Q99457 506 aaPredicted RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 RMND1Q9NWS8 449 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ERBINQ96RT1 1412 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ZMYM3Q14202 1370 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 LUC7L3O95232 432 aaKnown RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 KIF4AO95239 1232 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 LRPPRCP42704 1394 aaKnown RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 SAFB2Q14151 953 aaKnown RBP eCLIP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 TSNARE1Q96NA8 513 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ATF7IPQ6VMQ6 1270 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 GBP1P32455 592 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 TCHPQ9BT92 498 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 BCL2L13Q9BXK5 485 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 BMP15O95972 392 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ATP11AP98196 1134 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 SMC6Q96SB8 1091 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 NUP88Q99567 741 aaPredicted RBP6.38□□□□□ -1.39
PTPRB-202ENST00000334414 VCXQ9H320 206 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 MYO1BO43795 1136 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 GOLGA1Q92805 767 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 STK26Q9P289 416 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 TSNAXIP1Q2TAA8 658 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 ANKRD50Q9ULJ7 1429 aa6.38□□□□□ -1.39
PTPRB-202ENST00000334414 SEPT14Q6ZU15 432 aa6.37□□□□□ -1.39
PTPRB-202ENST00000334414 LMNTD2Q8IXW0 634 aa6.37□□□□□ -1.39
PTPRB-202ENST00000334414 ZSCAN16Q9H4T2 348 aaPredicted RBP6.37□□□□□ -1.39
PTPRB-202ENST00000334414 GRIPAP1Q4V328 841 aa6.37□□□□□ -1.39
PTPRB-202ENST00000334414 KLHL34Q8N239 644 aa6.37□□□□□ -1.39
PTPRB-202ENST00000334414 CTAGE9A4FU28 777 aa6.37□□□□□ -1.39
PTPRB-202ENST00000334414 ALDH3A1P30838 453 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms