RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ATP6V1AP38606 617 aa24.04■■□□□ 1.44
HDDC3-201ENST00000330334 LINC00116Q8NCU8 138 aa24.04■■□□□ 1.44
HDDC3-201ENST00000330334 KDM6AO15550 1401 aaPredicted RBP24.03■■□□□ 1.44
HDDC3-201ENST00000330334 CABP4P57796 275 aa24.03■■□□□ 1.44
HDDC3-201ENST00000330334 ITPK1Q13572 414 aa24.03■■□□□ 1.44
HDDC3-201ENST00000330334 DIAPH1O60610 1272 aaKnown RBP24.02■■□□□ 1.44
HDDC3-201ENST00000330334 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.01■■□□□ 1.43
HDDC3-201ENST00000330334 AMIGO3Q86WK7 504 aa24.01■■□□□ 1.43
HDDC3-201ENST00000330334 AKAP4Q5JQC9 854 aa24■■□□□ 1.43
HDDC3-201ENST00000330334 RC3H1Q5TC82 1133 aaKnown RBP23.99■■□□□ 1.43
HDDC3-201ENST00000330334 NFATC2IPQ8NCF5 419 aa23.98■■□□□ 1.43
HDDC3-201ENST00000330334 SLC4A9Q96Q91 983 aa23.98■■□□□ 1.43
HDDC3-201ENST00000330334 ZNF831Q5JPB2 1677 aa23.97■■□□□ 1.43
HDDC3-201ENST00000330334 MSL1Q68DK7 614 aa23.97■■□□□ 1.43
HDDC3-201ENST00000330334 GNPATO15228 680 aa23.96■■□□□ 1.43
HDDC3-201ENST00000330334 HMOX1P09601 288 aa23.96■■□□□ 1.43
HDDC3-201ENST00000330334 CD2APQ9Y5K6 639 aa23.96■■□□□ 1.43
HDDC3-201ENST00000330334 UBR3Q6ZT12 1888 aa23.96■■□□□ 1.43
HDDC3-201ENST00000330334 PHF14O94880 888 aa23.95■■□□□ 1.42
HDDC3-201ENST00000330334 KLHL34Q8N239 644 aa23.95■■□□□ 1.42
HDDC3-201ENST00000330334 RBM42Q9BTD8 480 aaKnown RBP23.95■■□□□ 1.42
HDDC3-201ENST00000330334 GOLGB1Q14789 3259 aaKnown RBP23.95■■□□□ 1.42
HDDC3-201ENST00000330334 CNTNAP4Q9C0A0 1308 aa23.93■■□□□ 1.42
HDDC3-201ENST00000330334 ADRA2BP18089 450 aa23.93■■□□□ 1.42
HDDC3-201ENST00000330334 GPR162Q16538 588 aa23.93■■□□□ 1.42
HDDC3-201ENST00000330334 NLGN2Q8NFZ4 835 aa23.93■■□□□ 1.42
HDDC3-201ENST00000330334 RTCBQ9Y3I0 505 aaKnown RBP23.93■■□□□ 1.42
HDDC3-201ENST00000330334 TRAPPC3LQ5T215 181 aa23.92■■□□□ 1.42
HDDC3-201ENST00000330334 SMIM5Q71RC9 77 aa23.92■■□□□ 1.42
HDDC3-201ENST00000330334 SLC52A2Q9HAB3 445 aa23.92■■□□□ 1.42
HDDC3-201ENST00000330334 COL3A1P02461 1466 aaPredicted RBP23.92■■□□□ 1.42
HDDC3-201ENST00000330334 MTHFSDQ2M296 383 aaKnown RBP23.91■■□□□ 1.42
HDDC3-201ENST00000330334 LGR6Q9HBX8 967 aa23.91■■□□□ 1.42
HDDC3-201ENST00000330334 RNMTO43148 476 aaKnown RBP23.9■■□□□ 1.42
HDDC3-201ENST00000330334 RPS6KA4O75676 772 aa23.9■■□□□ 1.42
HDDC3-201ENST00000330334 PTCD1O75127 700 aaKnown RBP23.89■■□□□ 1.41
HDDC3-201ENST00000330334 SCN11AQ9UI33 1791 aa23.88■■□□□ 1.41
HDDC3-201ENST00000330334 CNGB1Q14028 1251 aaPredicted RBP23.87■■□□□ 1.41
HDDC3-201ENST00000330334 CFAP53Q96M91 514 aa23.87■■□□□ 1.41
HDDC3-201ENST00000330334 U2SURPO15042 1029 aaKnown RBP23.86■■□□□ 1.41
HDDC3-201ENST00000330334 GRIN3BO60391 1043 aa23.86■■□□□ 1.41
HDDC3-201ENST00000330334 NLGN1Q8N2Q7 840 aa23.86■■□□□ 1.41
HDDC3-201ENST00000330334 ARHGEF1Q92888 912 aaKnown RBP23.86■■□□□ 1.41
HDDC3-201ENST00000330334 MRC1P22897 1456 aa23.86■■□□□ 1.41
HDDC3-201ENST00000330334 GAS2L2Q8NHY3 880 aa23.84■■□□□ 1.41
HDDC3-201ENST00000330334 COL5A3P25940 1745 aaPredicted RBP23.84■■□□□ 1.41
HDDC3-201ENST00000330334 PPP2R1AP30153 589 aa23.83■■□□□ 1.41
HDDC3-201ENST00000330334 RFC4P35249 363 aa23.83■■□□□ 1.41
HDDC3-201ENST00000330334 CRKLP46109 303 aaKnown RBP23.83■■□□□ 1.41
HDDC3-201ENST00000330334 NUDCQ9Y266 331 aa23.83■■□□□ 1.41
HDDC3-201ENST00000330334 ADAMTS7Q9UKP4 1686 aa23.83■■□□□ 1.4
HDDC3-201ENST00000330334 CICQ96RK0 1608 aaPredicted RBP23.82■■□□□ 1.4
HDDC3-201ENST00000330334 CHD4Q14839 1912 aa23.81■■□□□ 1.4
HDDC3-201ENST00000330334 GNAT3A8MTJ3 354 aa23.81■■□□□ 1.4
HDDC3-201ENST00000330334 MMP10P09238 476 aa23.81■■□□□ 1.4
HDDC3-201ENST00000330334 YBX3P16989 372 aaKnown RBP eCLIP23.81■■□□□ 1.47e-9■□□□□ 10.7
HDDC3-201ENST00000330334 PELP1Q8IZL8 1130 aaKnown RBP23.81■■□□□ 1.4
HDDC3-201ENST00000330334 VSIG10Q8N0Z9 540 aa23.81■■□□□ 1.4
HDDC3-201ENST00000330334 ZNF784Q8NCA9 323 aaPredicted RBP23.81■■□□□ 1.4
HDDC3-201ENST00000330334 GYS1P13807 737 aa23.8■■□□□ 1.4
HDDC3-201ENST00000330334 INTS5Q6P9B9 1019 aaKnown RBP23.8■■□□□ 1.4
HDDC3-201ENST00000330334 SLC39A6Q13433 755 aa23.79■■□□□ 1.4
HDDC3-201ENST00000330334 RSPH6AQ9H0K4 717 aa23.79■■□□□ 1.4
HDDC3-201ENST00000330334 MYH14Q7Z406 1995 aaKnown RBP23.79■■□□□ 1.4
HDDC3-201ENST00000330334 DNAJC10Q8IXB1 793 aa23.78■■□□□ 1.4
HDDC3-201ENST00000330334 IL17REQ8NFR9 667 aa23.78■■□□□ 1.4
HDDC3-201ENST00000330334 CYP19A1P11511 503 aaPredicted RBP23.77■■□□□ 1.4
HDDC3-201ENST00000330334 CCDC87Q9NVE4 849 aa23.77■■□□□ 1.4
HDDC3-201ENST00000330334 FCHSD2O94868 740 aa23.76■■□□□ 1.39
HDDC3-201ENST00000330334 PRKAR2BP31323 418 aa23.76■■□□□ 1.39
HDDC3-201ENST00000330334 PHACTR3Q96KR7 559 aa23.76■■□□□ 1.39
HDDC3-201ENST00000330334 TGFB2P61812 414 aa23.75■■□□□ 1.39
HDDC3-201ENST00000330334 USP42Q9H9J4 1324 aaKnown RBP23.75■■□□□ 1.39
HDDC3-201ENST00000330334 TJP1Q07157 1748 aa23.75■■□□□ 1.39
HDDC3-201ENST00000330334 KCPQ6ZWJ8 1503 aa23.74■■□□□ 1.39
HDDC3-201ENST00000330334 TEFQ10587 303 aa23.74■■□□□ 1.39
HDDC3-201ENST00000330334 CEMIPQ8WUJ3 1361 aa23.74■■□□□ 1.39
HDDC3-201ENST00000330334 U2AF1L5P0DN76 240 aaPredicted RBP23.73■■□□□ 1.39
HDDC3-201ENST00000330334 U2AF1Q01081 240 aaKnown RBP eCLIP23.73■■□□□ 1.39
HDDC3-201ENST00000330334 TTC5Q8N0Z6 440 aa23.73■■□□□ 1.39
HDDC3-201ENST00000330334 ZNF790Q6PG37 636 aa23.72■■□□□ 1.39
HDDC3-201ENST00000330334 PARP3Q9Y6F1 533 aa23.72■■□□□ 1.39
HDDC3-201ENST00000330334 SOS1Q07889 1333 aaPredicted RBP23.72■■□□□ 1.39
HDDC3-201ENST00000330334 TEX13AQ9BXU3 409 aaPredicted RBP23.71■■□□□ 1.39
HDDC3-201ENST00000330334 STARD3NLO95772 234 aa23.7■■□□□ 1.38
HDDC3-201ENST00000330334 SRP68Q9UHB9 627 aaKnown RBP23.7■■□□□ 1.38
HDDC3-201ENST00000330334 C10orf71Q711Q0 1435 aa23.69■■□□□ 1.38
HDDC3-201ENST00000330334 VIRMAQ69YN4 1812 aaKnown RBP23.69■■□□□ 1.38
HDDC3-201ENST00000330334 ZPR1O75312 459 aa23.69■■□□□ 1.38
HDDC3-201ENST00000330334 FKBP8Q14318 412 aa23.69■■□□□ 1.38
HDDC3-201ENST00000330334 HTATSF1O43719 755 aaKnown RBP23.68■■□□□ 1.38
HDDC3-201ENST00000330334 TM4SF1P30408 202 aa23.68■■□□□ 1.38
HDDC3-201ENST00000330334 ZNF496Q96IT1 587 aaPredicted RBP23.68■■□□□ 1.38
HDDC3-201ENST00000330334 C4AP0C0L4 1744 aa23.67■■□□□ 1.38
HDDC3-201ENST00000330334 NARFQ9UHQ1 456 aa23.67■■□□□ 1.38
HDDC3-201ENST00000330334 ZBTB1Q9Y2K1 713 aa23.67■■□□□ 1.38
HDDC3-201ENST00000330334 KIF13BQ9NQT8 1826 aa23.67■■□□□ 1.38
HDDC3-201ENST00000330334 UBR2Q8IWV8 1755 aa23.67■■□□□ 1.38
HDDC3-201ENST00000330334 HEG1Q9ULI3 1381 aa23.66■■□□□ 1.38
HDDC3-201ENST00000330334 PXDNLA1KZ92 1463 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms