RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 HTATSF1O43719 755 aaKnown RBP16.52■□□□□ 0.24
CPNE1-201ENST00000317677 C8orf37Q96NL8 207 aa16.52■□□□□ 0.24
CPNE1-201ENST00000317677 FTSJ3Q8IY81 847 aaKnown RBP16.51■□□□□ 0.23
CPNE1-201ENST00000317677 TMEM57Q8N5G2 664 aa16.51■□□□□ 0.23
CPNE1-201ENST00000317677 RTF1Q92541 710 aaKnown RBP16.51■□□□□ 0.23
CPNE1-201ENST00000317677 AFF2P51816 1311 aa16.51■□□□□ 0.23
CPNE1-201ENST00000317677 ADAMTS2O95450 1211 aa16.5■□□□□ 0.23
CPNE1-201ENST00000317677 ABCA3Q99758 1704 aa16.5■□□□□ 0.23
CPNE1-201ENST00000317677 NGLY1Q96IV0 654 aa16.49■□□□□ 0.23
CPNE1-201ENST00000317677 ERBB3P21860 1342 aa16.49■□□□□ 0.23
CPNE1-201ENST00000317677 AAMPQ13685 434 aa16.48■□□□□ 0.23
CPNE1-201ENST00000317677 TSPYL4Q9UJ04 414 aa16.48■□□□□ 0.23
CPNE1-201ENST00000317677 CEMIPQ8WUJ3 1361 aa16.48■□□□□ 0.23
CPNE1-201ENST00000317677 KDM3BQ7LBC6 1761 aa16.48■□□□□ 0.23
CPNE1-201ENST00000317677 IPO8O15397 1037 aaKnown RBP16.47■□□□□ 0.23
CPNE1-201ENST00000317677 RXRBP28702 533 aa16.47■□□□□ 0.23
CPNE1-201ENST00000317677 ITPRIPQ8IWB1 547 aa16.47■□□□□ 0.23
CPNE1-201ENST00000317677 ARHGAP45Q92619 1136 aa16.47■□□□□ 0.23
CPNE1-201ENST00000317677 RGS12O14924 1447 aa16.47■□□□□ 0.23
CPNE1-201ENST00000317677 ABCC6O95255 1503 aa16.47■□□□□ 0.23
CPNE1-201ENST00000317677 ABCC4O15439 1325 aa16.46■□□□□ 0.23
CPNE1-201ENST00000317677 HSP90AA2PQ14568 343 aaPredicted RBP16.46■□□□□ 0.23
CPNE1-201ENST00000317677 ADAMTS7Q9UKP4 1686 aa16.46■□□□□ 0.23
CPNE1-201ENST00000317677 LGR6Q9HBX8 967 aa16.46■□□□□ 0.22
CPNE1-201ENST00000317677 DDX19BQ9UMR2 479 aa16.46■□□□□ 0.22
CPNE1-201ENST00000317677 CHRNA2Q15822 529 aa16.45■□□□□ 0.22
CPNE1-201ENST00000317677 ZBTB40Q9NUA8 1239 aa16.45■□□□□ 0.22
CPNE1-201ENST00000317677 CPDO75976 1380 aa16.44■□□□□ 0.22
CPNE1-201ENST00000317677 SIPA1L3O60292 1781 aaPredicted RBP16.44■□□□□ 0.22
CPNE1-201ENST00000317677 QTRT2Q9H974 415 aaKnown RBP16.44■□□□□ 0.22
CPNE1-201ENST00000317677 HAP1P54257 671 aaPredicted RBP16.43■□□□□ 0.22
CPNE1-201ENST00000317677 ZNF530Q6P9A1 599 aaPredicted RBP16.43■□□□□ 0.22
CPNE1-201ENST00000317677 MEGF6O75095 1541 aa16.42■□□□□ 0.22
CPNE1-201ENST00000317677 TAF7Q15545 349 aaPredicted RBP16.42■□□□□ 0.22
CPNE1-201ENST00000317677 AKAP4Q5JQC9 854 aa16.42■□□□□ 0.22
CPNE1-201ENST00000317677 USP21Q9UK80 565 aa16.42■□□□□ 0.22
CPNE1-201ENST00000317677 RBM6P78332 1123 aaKnown RBP16.42■□□□□ 0.22
CPNE1-201ENST00000317677 PLEKHO1Q53GL0 409 aaPredicted RBP16.42■□□□□ 0.22
CPNE1-201ENST00000317677 RRAGDQ9NQL2 400 aaPredicted RBP16.42■□□□□ 0.22
CPNE1-201ENST00000317677 ZBTB7BO15156 539 aaPredicted RBP16.41■□□□□ 0.22
CPNE1-201ENST00000317677 FNBP4Q8N3X1 1017 aaPredicted RBP16.41■□□□□ 0.22
CPNE1-201ENST00000317677 AMOTQ4VCS5 1084 aa16.4■□□□□ 0.22
CPNE1-201ENST00000317677 MPRIPQ6WCQ1 1025 aa16.4■□□□□ 0.22
CPNE1-201ENST00000317677 G2E3Q7L622 706 aa16.4■□□□□ 0.22
CPNE1-201ENST00000317677 TRPC5Q9UL62 973 aaPredicted RBP16.4■□□□□ 0.22
CPNE1-201ENST00000317677 HSP90AA1P07900 732 aaKnown RBP16.4■□□□□ 0.22
CPNE1-201ENST00000317677 API5Q9BZZ5 524 aaKnown RBP16.4■□□□□ 0.22
CPNE1-201ENST00000317677 BABAM1Q9NWV8 329 aa16.4■□□□□ 0.22
CPNE1-201ENST00000317677 PKD1L3Q7Z443 1732 aa16.4■□□□□ 0.22
CPNE1-201ENST00000317677 L1TD1Q5T7N2 865 aaKnown RBP16.39■□□□□ 0.21
CPNE1-201ENST00000317677 NLRP2Q9NX02 1062 aa16.39■□□□□ 0.21
CPNE1-201ENST00000317677 SCN11AQ9UI33 1791 aa16.39■□□□□ 0.21
CPNE1-201ENST00000317677 OVOS2A0A0G2JMS6 1433 aa16.39■□□□□ 0.21
CPNE1-201ENST00000317677 RNMTO43148 476 aaKnown RBP16.38■□□□□ 0.21
CPNE1-201ENST00000317677 KCNQ3O43525 872 aa16.38■□□□□ 0.21
CPNE1-201ENST00000317677 RGS3P49796 1198 aa16.38■□□□□ 0.21
CPNE1-201ENST00000317677 HDAC1Q13547 482 aaPredicted RBP16.38■□□□□ 0.21
CPNE1-201ENST00000317677 SLC4A2P04920 1241 aa16.37■□□□□ 0.21
CPNE1-201ENST00000317677 RWDD1Q9H446 243 aaPredicted RBP16.37■□□□□ 0.21
CPNE1-201ENST00000317677 CACNA1FO60840 1977 aa16.37■□□□□ 0.21
CPNE1-201ENST00000317677 CLCN1P35523 988 aa16.37■□□□□ 0.21
CPNE1-201ENST00000317677 PDZRN3Q9UPQ7 1066 aa16.37■□□□□ 0.21
CPNE1-201ENST00000317677 EIF4A1P60842 406 aaKnown RBP16.36■□□□□ 0.21
CPNE1-201ENST00000317677 INTS3Q68E01 1043 aaKnown RBP16.36■□□□□ 0.21
CPNE1-201ENST00000317677 C1orf115Q9H7X2 142 aa16.36■□□□□ 0.21
CPNE1-201ENST00000317677 KDM6AO15550 1401 aaPredicted RBP16.36■□□□□ 0.21
CPNE1-201ENST00000317677 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.36■□□□□ 0.21
CPNE1-201ENST00000317677 PTPRCP08575 1304 aa16.36■□□□□ 0.21
CPNE1-201ENST00000317677 ATRNO75882 1429 aa16.35■□□□□ 0.21
CPNE1-201ENST00000317677 COL5A2P05997 1499 aaPredicted RBP16.35■□□□□ 0.21
CPNE1-201ENST00000317677 N4BP2Q86UW6 1770 aaPredicted RBP16.35■□□□□ 0.21
CPNE1-201ENST00000317677 FRAT2O75474 233 aaPredicted RBP16.35■□□□□ 0.21
CPNE1-201ENST00000317677 CSB-PGBD3P0DP91 1061 aa16.35■□□□□ 0.21
CPNE1-201ENST00000317677 C1orf141Q5JVX7 400 aa16.35■□□□□ 0.21
CPNE1-201ENST00000317677 NECTIN2Q92692 538 aa16.35■□□□□ 0.21
CPNE1-201ENST00000317677 BCL9LQ86UU0 1499 aa16.33■□□□□ 0.21
CPNE1-201ENST00000317677 UNC5CLQ8IV45 518 aa16.33■□□□□ 0.21
CPNE1-201ENST00000317677 SIRT2Q8IXJ6 389 aa16.33■□□□□ 0.21
CPNE1-201ENST00000317677 RAPGEF4Q8WZA2 1011 aa16.33■□□□□ 0.21
CPNE1-201ENST00000317677 SOS1Q07889 1333 aaPredicted RBP16.33■□□□□ 0.2
CPNE1-201ENST00000317677 TEFQ10587 303 aa16.33■□□□□ 0.2
CPNE1-201ENST00000317677 C8orf34Q49A92 452 aa16.33■□□□□ 0.2
CPNE1-201ENST00000317677 SMC5Q8IY18 1101 aa16.33■□□□□ 0.2
CPNE1-201ENST00000317677 PRDM11Q9NQV5 511 aa16.33■□□□□ 0.2
CPNE1-201ENST00000317677 SLIT2O94813 1529 aa16.32■□□□□ 0.2
CPNE1-201ENST00000317677 F6X3S4 739 aa16.32■□□□□ 0.2
CPNE1-201ENST00000317677 TATP17735 454 aaPredicted RBP16.32■□□□□ 0.2
CPNE1-201ENST00000317677 SHANK3Q9BYB0 1731 aa16.32■□□□□ 0.2
CPNE1-201ENST00000317677 PARP4Q9UKK3 1724 aaKnown RBP16.32■□□□□ 0.2
CPNE1-201ENST00000317677 NWD2Q9ULI1 1742 aa16.32■□□□□ 0.2
CPNE1-201ENST00000317677 BTBD11A6QL63 1104 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 PHKG2P15735 406 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 CCDC30Q5VVM6 783 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 WDR17Q8IZU2 1322 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 HEG1Q9ULI3 1381 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 PLCH1Q4KWH8 1693 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.31■□□□□ 0.26e-7■■□□□ 13.5
CPNE1-201ENST00000317677 PLEKHG2Q9H7P9 1386 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 ATP10DQ9P241 1426 aa16.31■□□□□ 0.2
CPNE1-201ENST00000317677 CYP27B1O15528 508 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms