RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 EYA1Q99502 592 aa26.93■■□□□ 1.9
SHMT1-201ENST00000316694 LMBRD1Q9NUN5 540 aa26.93■■□□□ 1.9
SHMT1-201ENST00000316694 IBTKQ9P2D0 1353 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-201ENST00000316694 FMN2Q9NZ56 1722 aa26.92■■□□□ 1.9
SHMT1-201ENST00000316694 FKBP5Q13451 457 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-201ENST00000316694 SBNO1A3KN83 1393 aa26.91■■□□□ 1.9
SHMT1-201ENST00000316694 ANP32BQ92688 251 aaKnown RBP26.91■■□□□ 1.9
SHMT1-201ENST00000316694 LRRCC1Q9C099 1032 aa26.9■■□□□ 1.9
SHMT1-201ENST00000316694 TTC21AQ8NDW8 1320 aa26.9■■□□□ 1.9
SHMT1-201ENST00000316694 PRPF40AO75400 957 aaKnown RBP26.9■■□□□ 1.9
SHMT1-201ENST00000316694 NEK4P51957 841 aa26.9■■□□□ 1.9
SHMT1-201ENST00000316694 CCDC173Q0VFZ6 552 aa26.9■■□□□ 1.9
SHMT1-201ENST00000316694 FLIIQ13045 1269 aa26.9■■□□□ 1.9
SHMT1-201ENST00000316694 CEP170BQ9Y4F5 1589 aaPredicted RBP26.89■■□□□ 1.9
SHMT1-201ENST00000316694 ZSCAN23Q3MJ62 389 aa26.89■■□□□ 1.89
SHMT1-201ENST00000316694 ZDHHC9Q9Y397 364 aa26.89■■□□□ 1.89
SHMT1-201ENST00000316694 KDRP35968 1356 aa26.88■■□□□ 1.89
SHMT1-201ENST00000316694 PNMA6EA0A0J9YXQ4 647 aa26.88■■□□□ 1.89
SHMT1-201ENST00000316694 TBX22Q9Y458 520 aa26.88■■□□□ 1.89
SHMT1-201ENST00000316694 MX1P20591 662 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 FOXD4L5Q5VV16 416 aaPredicted RBP26.87■■□□□ 1.89
SHMT1-201ENST00000316694 NUTM2GQ5VZR2 741 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 FOXD4L4Q8WXT5 416 aaPredicted RBP26.87■■□□□ 1.89
SHMT1-201ENST00000316694 IGSF1Q8N6C5 1336 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 TRIM6-TRIM34B2RNG4 842 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 GNAI3P08754 354 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 ZNF445P59923 1031 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 CCDC30Q5VVM6 783 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 RILPL2Q969X0 211 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 CHAMP1Q96JM3 812 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 ESYT1Q9BSJ8 1104 aa26.87■■□□□ 1.89
SHMT1-201ENST00000316694 PPP1R9BQ96SB3 815 aa26.85■■□□□ 1.89
SHMT1-201ENST00000316694 SALL3Q9BXA9 1300 aa26.84■■□□□ 1.89
SHMT1-201ENST00000316694 NLRP6P59044 892 aa26.84■■□□□ 1.89
SHMT1-201ENST00000316694 TMX3Q96JJ7 454 aa26.84■■□□□ 1.89
SHMT1-201ENST00000316694 ANO2Q9NQ90 1003 aa26.83■■□□□ 1.89
SHMT1-201ENST00000316694 DIP2AQ14689 1571 aa26.83■■□□□ 1.89
SHMT1-201ENST00000316694 GNAT3A8MTJ3 354 aa26.83■■□□□ 1.89
SHMT1-201ENST00000316694 ATP8B2P98198 1209 aa26.83■■□□□ 1.89
SHMT1-201ENST00000316694 GPT2Q8TD30 523 aa26.83■■□□□ 1.89
SHMT1-201ENST00000316694 RBM27Q9P2N5 1060 aaKnown RBP26.83■■□□□ 1.89
SHMT1-201ENST00000316694 LRRFIP2Q9Y608 721 aaKnown RBP26.83■■□□□ 1.89
SHMT1-201ENST00000316694 NOL8Q76FK4 1167 aaKnown RBP26.82■■□□□ 1.88
SHMT1-201ENST00000316694 MCCP23508 829 aa26.82■■□□□ 1.88
SHMT1-201ENST00000316694 PALD1Q9ULE6 856 aa26.82■■□□□ 1.88
SHMT1-201ENST00000316694 ARHGAP23Q9P227 1491 aa26.81■■□□□ 1.88
SHMT1-201ENST00000316694 SLIT1O75093 1534 aa26.81■■□□□ 1.88
SHMT1-201ENST00000316694 CHMLP26374 656 aa26.8■■□□□ 1.88
SHMT1-201ENST00000316694 PIK3C2AO00443 1686 aa26.8■■□□□ 1.88
SHMT1-201ENST00000316694 HTATSF1O43719 755 aaKnown RBP26.79■■□□□ 1.88
SHMT1-201ENST00000316694 FAM208AQ9UK61 1670 aaKnown RBP26.79■■□□□ 1.88
SHMT1-201ENST00000316694 LTV1Q96GA3 475 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-201ENST00000316694 RBSNQ9H1K0 784 aa26.79■■□□□ 1.88
SHMT1-201ENST00000316694 PRIM1P49642 420 aaKnown RBP26.78■■□□□ 1.88
SHMT1-201ENST00000316694 THEMISQ8N1K5 641 aaPredicted RBP26.78■■□□□ 1.88
SHMT1-201ENST00000316694 KCNA6P17658 529 aa26.78■■□□□ 1.88
SHMT1-201ENST00000316694 XRN1Q8IZH2 1706 aaKnown RBP26.78■■□□□ 1.88
SHMT1-201ENST00000316694 MCM2P49736 904 aa26.77■■□□□ 1.88
SHMT1-201ENST00000316694 UNC5CLQ8IV45 518 aa26.77■■□□□ 1.88
SHMT1-201ENST00000316694 IL17REQ8NFR9 667 aa26.77■■□□□ 1.88
SHMT1-201ENST00000316694 IL1RAPL2Q9NP60 686 aa26.77■■□□□ 1.88
SHMT1-201ENST00000316694 TUBGCP6Q96RT7 1819 aa26.77■■□□□ 1.88
SHMT1-201ENST00000316694 UBTFL1P0CB47 393 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-201ENST00000316694 HOXC9P31274 260 aa26.75■■□□□ 1.87
SHMT1-201ENST00000316694 ZSCAN30Q86W11 494 aa26.75■■□□□ 1.87
SHMT1-201ENST00000316694 USP44Q9H0E7 712 aa26.75■■□□□ 1.87
SHMT1-201ENST00000316694 SRCIN1Q9C0H9 1055 aa26.75■■□□□ 1.87
SHMT1-201ENST00000316694 NSFL1CQ9UNZ2 370 aaKnown RBP26.75■■□□□ 1.87
SHMT1-201ENST00000316694 LRRC37A3O60309 1634 aa26.75■■□□□ 1.87
SHMT1-201ENST00000316694 UPF3BQ9BZI7 483 aaKnown RBP26.74■■□□□ 1.87
SHMT1-201ENST00000316694 STAP2Q9UGK3 403 aa26.74■■□□□ 1.87
SHMT1-201ENST00000316694 MAP3K5Q99683 1374 aa26.74■■□□□ 1.87
SHMT1-201ENST00000316694 TAF7Q15545 349 aaPredicted RBP26.74■■□□□ 1.87
SHMT1-201ENST00000316694 TMEM63CQ9P1W3 806 aa26.74■■□□□ 1.87
SHMT1-201ENST00000316694 ANAPC15P60006 121 aa26.73■■□□□ 1.87
SHMT1-201ENST00000316694 ABTB2Q8N961 1025 aa26.73■■□□□ 1.87
SHMT1-201ENST00000316694 NUTM1Q86Y26 1132 aa26.73■■□□□ 1.87
SHMT1-201ENST00000316694 SYCE3A1L190 88 aa26.72■■□□□ 1.87
SHMT1-201ENST00000316694 HDGFL1Q5TGJ6 251 aa26.72■■□□□ 1.87
SHMT1-201ENST00000316694 PHAXQ9H814 394 aaKnown RBP26.72■■□□□ 1.87
SHMT1-201ENST00000316694 CUL4AQ13619 759 aa26.72■■□□□ 1.87
SHMT1-201ENST00000316694 BRD1O95696 1058 aa26.71■■□□□ 1.87
SHMT1-201ENST00000316694 MSNP26038 577 aaKnown RBP26.71■■□□□ 1.87
SHMT1-201ENST00000316694 USHBP1Q8N6Y0 703 aa26.71■■□□□ 1.87
SHMT1-201ENST00000316694 CACNA1FO60840 1977 aa26.7■■□□□ 1.87
SHMT1-201ENST00000316694 MAP4K4O95819 1239 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-201ENST00000316694 C14orf37Q86TY3 774 aa26.7■■□□□ 1.86
SHMT1-201ENST00000316694 SOS1Q07889 1333 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-201ENST00000316694 IL25Q9H293 177 aa26.7■■□□□ 1.86
SHMT1-201ENST00000316694 FER1L4A9Z1Z3 1794 aa26.69■■□□□ 1.86
SHMT1-201ENST00000316694 SURF6O75683 361 aaKnown RBP26.68■■□□□ 1.86
SHMT1-201ENST00000316694 FOXD4L6Q3SYB3 417 aaPredicted RBP26.68■■□□□ 1.86
SHMT1-201ENST00000316694 FOXD4L3Q6VB84 417 aaPredicted RBP26.68■■□□□ 1.86
SHMT1-201ENST00000316694 RBM33Q96EV2 1170 aaKnown RBP26.68■■□□□ 1.86
SHMT1-201ENST00000316694 LRSAM1Q6UWE0 723 aa26.68■■□□□ 1.86
SHMT1-201ENST00000316694 PPP1R42Q7Z4L9 355 aa26.68■■□□□ 1.86
SHMT1-201ENST00000316694 SSH3Q8TE77 659 aa26.67■■□□□ 1.86
SHMT1-201ENST00000316694 INTS4Q96HW7 963 aaKnown RBP26.67■■□□□ 1.86
SHMT1-201ENST00000316694 MBD3O95983 291 aa26.67■■□□□ 1.86
SHMT1-201ENST00000316694 EIF2S2P20042 333 aaKnown RBP26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms