RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ADAMTS7Q9UKP4 1686 aa21.97■■□□□ 1.11
LSM1-201ENST00000311351 COL5A3P25940 1745 aaPredicted RBP21.97■■□□□ 1.11
LSM1-201ENST00000311351 ZNF831Q5JPB2 1677 aa21.96■■□□□ 1.11
LSM1-201ENST00000311351 ITPK1Q13572 414 aa21.96■■□□□ 1.11
LSM1-201ENST00000311351 COL23A1Q86Y22 540 aaPredicted RBP21.96■■□□□ 1.11
LSM1-201ENST00000311351 LINC00116Q8NCU8 138 aa21.96■■□□□ 1.11
LSM1-201ENST00000311351 MRC1P22897 1456 aa21.96■■□□□ 1.11
LSM1-201ENST00000311351 MTHFSDQ2M296 383 aaKnown RBP21.95■■□□□ 1.1
LSM1-201ENST00000311351 AKAP4Q5JQC9 854 aa21.95■■□□□ 1.1
LSM1-201ENST00000311351 AMIGO3Q86WK7 504 aa21.95■■□□□ 1.1
LSM1-201ENST00000311351 SLC16A10Q8TF71 515 aa21.95■■□□□ 1.1
LSM1-201ENST00000311351 ATP6V1AP38606 617 aa21.94■■□□□ 1.1
LSM1-201ENST00000311351 SMIM5Q71RC9 77 aa21.94■■□□□ 1.1
LSM1-201ENST00000311351 AK7Q96M32 723 aa21.94■■□□□ 1.1
LSM1-201ENST00000311351 CFAP53Q96M91 514 aa21.94■■□□□ 1.1
LSM1-201ENST00000311351 SLC4A9Q96Q91 983 aa21.93■■□□□ 1.1
LSM1-201ENST00000311351 TJP1Q07157 1748 aa21.92■■□□□ 1.1
LSM1-201ENST00000311351 NFATC2IPQ8NCF5 419 aa21.92■■□□□ 1.1
LSM1-201ENST00000311351 ARXQ96QS3 562 aa21.92■■□□□ 1.1
LSM1-201ENST00000311351 RBM42Q9BTD8 480 aaKnown RBP21.92■■□□□ 1.1
LSM1-201ENST00000311351 FHDC1Q9C0D6 1143 aaPredicted RBP21.92■■□□□ 1.1
LSM1-201ENST00000311351 PHF14O94880 888 aa21.91■■□□□ 1.1
LSM1-201ENST00000311351 MSL1Q68DK7 614 aa21.91■■□□□ 1.1
LSM1-201ENST00000311351 LGR6Q9HBX8 967 aa21.91■■□□□ 1.1
LSM1-201ENST00000311351 CICQ96RK0 1608 aaPredicted RBP21.9■■□□□ 1.1
LSM1-201ENST00000311351 RNMTO43148 476 aaKnown RBP21.89■■□□□ 1.09
LSM1-201ENST00000311351 MYH14Q7Z406 1995 aaKnown RBP21.88■■□□□ 1.09
LSM1-201ENST00000311351 GNPATO15228 680 aa21.88■■□□□ 1.09
LSM1-201ENST00000311351 HMGB2P26583 209 aaKnown RBP21.88■■□□□ 1.09
LSM1-201ENST00000311351 POLD1P28340 1107 aa21.88■■□□□ 1.09
LSM1-201ENST00000311351 RSPH6AQ9H0K4 717 aa21.88■■□□□ 1.09
LSM1-201ENST00000311351 SLC52A2Q9HAB3 445 aa21.88■■□□□ 1.09
LSM1-201ENST00000311351 MAP3K5Q99683 1374 aa21.87■■□□□ 1.09
LSM1-201ENST00000311351 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.87■■□□□ 1.09
LSM1-201ENST00000311351 PTCD1O75127 700 aaKnown RBP21.87■■□□□ 1.09
LSM1-201ENST00000311351 PRKAR2BP31323 418 aa21.87■■□□□ 1.09
LSM1-201ENST00000311351 FLAD1Q8NFF5 587 aa21.87■■□□□ 1.09
LSM1-201ENST00000311351 SYT17Q9BSW7 474 aa21.87■■□□□ 1.09
LSM1-201ENST00000311351 SIPA1L3O60292 1781 aaPredicted RBP21.87■■□□□ 1.09
LSM1-201ENST00000311351 KLHL34Q8N239 644 aa21.86■■□□□ 1.09
LSM1-201ENST00000311351 NUDCQ9Y266 331 aa21.86■■□□□ 1.09
LSM1-201ENST00000311351 UBR2Q8IWV8 1755 aa21.85■■□□□ 1.09
LSM1-201ENST00000311351 U2AF1L5P0DN76 240 aaPredicted RBP21.85■■□□□ 1.09
LSM1-201ENST00000311351 SSFA2P28290 1259 aa21.85■■□□□ 1.09
LSM1-201ENST00000311351 U2AF1Q01081 240 aaKnown RBP eCLIP21.85■■□□□ 1.09
LSM1-201ENST00000311351 DDX10Q13206 875 aaKnown RBP21.85■■□□□ 1.09
LSM1-201ENST00000311351 C4AP0C0L4 1744 aa21.85■■□□□ 1.09
LSM1-201ENST00000311351 KCPQ6ZWJ8 1503 aa21.85■■□□□ 1.09
LSM1-201ENST00000311351 GAS2L2Q8NHY3 880 aa21.84■■□□□ 1.09
LSM1-201ENST00000311351 PHACTR3Q96KR7 559 aa21.84■■□□□ 1.09
LSM1-201ENST00000311351 SLC39A6Q13433 755 aa21.83■■□□□ 1.09
LSM1-201ENST00000311351 CNTNAP4Q9C0A0 1308 aa21.82■■□□□ 1.08
LSM1-201ENST00000311351 GNAT3A8MTJ3 354 aa21.81■■□□□ 1.08
LSM1-201ENST00000311351 IL17REQ8NFR9 667 aa21.8■■□□□ 1.08
LSM1-201ENST00000311351 RTCBQ9Y3I0 505 aaKnown RBP21.79■■□□□ 1.08
LSM1-201ENST00000311351 CRKLP46109 303 aaKnown RBP21.78■■□□□ 1.08
LSM1-201ENST00000311351 RC3H1Q5TC82 1133 aaKnown RBP21.78■■□□□ 1.08
LSM1-201ENST00000311351 NLGN2Q8NFZ4 835 aa21.78■■□□□ 1.08
LSM1-201ENST00000311351 DLG5Q8TDM6 1919 aa21.77■■□□□ 1.08
LSM1-201ENST00000311351 DNAJC10Q8IXB1 793 aa21.77■■□□□ 1.08
LSM1-201ENST00000311351 CEMIPQ8WUJ3 1361 aa21.76■■□□□ 1.07
LSM1-201ENST00000311351 DCAF8L1A6NGE4 600 aa21.76■■□□□ 1.07
LSM1-201ENST00000311351 FCHSD2O94868 740 aa21.76■■□□□ 1.07
LSM1-201ENST00000311351 TEFQ10587 303 aa21.76■■□□□ 1.07
LSM1-201ENST00000311351 RPS6KA4O75676 772 aa21.75■■□□□ 1.07
LSM1-201ENST00000311351 TRAPPC3LQ5T215 181 aa21.75■■□□□ 1.07
LSM1-201ENST00000311351 ARHGEF1Q92888 912 aaKnown RBP21.75■■□□□ 1.07
LSM1-201ENST00000311351 RALBP1Q15311 655 aa21.74■■□□□ 1.07
LSM1-201ENST00000311351 INTS5Q6P9B9 1019 aaKnown RBP21.72■■□□□ 1.07
LSM1-201ENST00000311351 TTC5Q8N0Z6 440 aa21.72■■□□□ 1.07
LSM1-201ENST00000311351 CYP19A1P11511 503 aaPredicted RBP21.71■■□□□ 1.07
LSM1-201ENST00000311351 MCM10Q7L590 875 aa21.71■■□□□ 1.07
LSM1-201ENST00000311351 CCDC87Q9NVE4 849 aa21.71■■□□□ 1.07
LSM1-201ENST00000311351 UTRNP46939 3433 aa21.71■■□□□ 1.07
LSM1-201ENST00000311351 RFC4P35249 363 aa21.7■■□□□ 1.06
LSM1-201ENST00000311351 DCTN1Q14203 1278 aa21.7■■□□□ 1.06
LSM1-201ENST00000311351 MMP10P09238 476 aa21.69■■□□□ 1.06
LSM1-201ENST00000311351 GYS1P13807 737 aa21.69■■□□□ 1.06
LSM1-201ENST00000311351 ZEB1P37275 1124 aaPredicted RBP21.69■■□□□ 1.06
LSM1-201ENST00000311351 ZNF790Q6PG37 636 aa21.69■■□□□ 1.06
LSM1-201ENST00000311351 PELP1Q8IZL8 1130 aaKnown RBP21.69■■□□□ 1.06
LSM1-201ENST00000311351 ZNF496Q96IT1 587 aaPredicted RBP21.69■■□□□ 1.06
LSM1-201ENST00000311351 SRP68Q9UHB9 627 aaKnown RBP21.69■■□□□ 1.06
LSM1-201ENST00000311351 MYBBP1AQ9BQG0 1328 aaKnown RBP21.69■■□□□ 1.06
LSM1-201ENST00000311351 GOLGB1Q14789 3259 aaKnown RBP21.68■■□□□ 1.06
LSM1-201ENST00000311351 VSIG10Q8N0Z9 540 aa21.68■■□□□ 1.06
LSM1-201ENST00000311351 RTF1Q92541 710 aaKnown RBP21.68■■□□□ 1.06
LSM1-201ENST00000311351 PLEKHF1Q96S99 279 aa21.68■■□□□ 1.06
LSM1-201ENST00000311351 ZBTB1Q9Y2K1 713 aa21.68■■□□□ 1.06
LSM1-201ENST00000311351 SOS1Q07889 1333 aaPredicted RBP21.68■■□□□ 1.06
LSM1-201ENST00000311351 HEG1Q9ULI3 1381 aa21.68■■□□□ 1.06
LSM1-201ENST00000311351 CHD4Q14839 1912 aa21.68■■□□□ 1.06
LSM1-201ENST00000311351 KIF13BQ9NQT8 1826 aa21.67■■□□□ 1.06
LSM1-201ENST00000311351 KCNQ3O43525 872 aa21.67■■□□□ 1.06
LSM1-201ENST00000311351 USP42Q9H9J4 1324 aaKnown RBP21.66■■□□□ 1.06
LSM1-201ENST00000311351 BTBD11A6QL63 1104 aa21.66■■□□□ 1.06
LSM1-201ENST00000311351 YY1P25490 414 aa21.66■■□□□ 1.06
LSM1-201ENST00000311351 GPR162Q16538 588 aa21.66■■□□□ 1.06
LSM1-201ENST00000311351 CD2APQ9Y5K6 639 aa21.66■■□□□ 1.06
LSM1-201ENST00000311351 KIAA1551Q9HCM1 1747 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms