RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ATG3Q9NT62 314 aa26.49■■□□□ 1.83
LIME1-201ENST00000309546 KDRP35968 1356 aa26.48■■□□□ 1.83
LIME1-201ENST00000309546 ERVV-2B6SEH9 535 aa26.48■■□□□ 1.83
LIME1-201ENST00000309546 ATP6V1AP38606 617 aa26.48■■□□□ 1.83
LIME1-201ENST00000309546 LINC00116Q8NCU8 138 aa26.48■■□□□ 1.83
LIME1-201ENST00000309546 ITPK1Q13572 414 aa26.46■■□□□ 1.83
LIME1-201ENST00000309546 AMIGO3Q86WK7 504 aa26.46■■□□□ 1.83
LIME1-201ENST00000309546 CABP4P57796 275 aa26.45■■□□□ 1.82
LIME1-201ENST00000309546 SMIM5Q71RC9 77 aa26.45■■□□□ 1.82
LIME1-201ENST00000309546 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.44■■□□□ 1.82
LIME1-201ENST00000309546 RBM42Q9BTD8 480 aaKnown RBP26.44■■□□□ 1.82
LIME1-201ENST00000309546 SCN11AQ9UI33 1791 aa26.43■■□□□ 1.82
LIME1-201ENST00000309546 HMOX1P09601 288 aa26.43■■□□□ 1.82
LIME1-201ENST00000309546 GNPATO15228 680 aa26.42■■□□□ 1.82
LIME1-201ENST00000309546 DIAPH1O60610 1272 aaKnown RBP26.42■■□□□ 1.82
LIME1-201ENST00000309546 NPC1L1Q9UHC9 1359 aa26.42■■□□□ 1.82
LIME1-201ENST00000309546 GPR162Q16538 588 aa26.41■■□□□ 1.82
LIME1-201ENST00000309546 PELP1Q8IZL8 1130 aaKnown RBP26.41■■□□□ 1.82
LIME1-201ENST00000309546 NLGN2Q8NFZ4 835 aa26.41■■□□□ 1.82
LIME1-201ENST00000309546 VIRMAQ69YN4 1812 aaKnown RBP26.41■■□□□ 1.82
LIME1-201ENST00000309546 ZNF831Q5JPB2 1677 aa26.41■■□□□ 1.82
LIME1-201ENST00000309546 COL5A3P25940 1745 aaPredicted RBP26.4■■□□□ 1.82
LIME1-201ENST00000309546 CHD4Q14839 1912 aa26.4■■□□□ 1.82
LIME1-201ENST00000309546 SSFA2P28290 1259 aa26.4■■□□□ 1.82
LIME1-201ENST00000309546 SLC4A9Q96Q91 983 aa26.38■■□□□ 1.81
LIME1-201ENST00000309546 NFATC2IPQ8NCF5 419 aa26.37■■□□□ 1.81
LIME1-201ENST00000309546 COL3A1P02461 1466 aaPredicted RBP26.36■■□□□ 1.81
LIME1-201ENST00000309546 AKAP4Q5JQC9 854 aa26.36■■□□□ 1.81
LIME1-201ENST00000309546 U2SURPO15042 1029 aaKnown RBP26.34■■□□□ 1.81
LIME1-201ENST00000309546 PTCD1O75127 700 aaKnown RBP26.34■■□□□ 1.81
LIME1-201ENST00000309546 RTCBQ9Y3I0 505 aaKnown RBP26.33■■□□□ 1.81
LIME1-201ENST00000309546 TJP1Q07157 1748 aa26.31■■□□□ 1.8
LIME1-201ENST00000309546 MTHFSDQ2M296 383 aaKnown RBP26.31■■□□□ 1.8
LIME1-201ENST00000309546 CNTNAP4Q9C0A0 1308 aa26.31■■□□□ 1.8
LIME1-201ENST00000309546 UTRNP46939 3433 aa26.31■■□□□ 1.8
LIME1-201ENST00000309546 MYH14Q7Z406 1995 aaKnown RBP26.31■■□□□ 1.8
LIME1-201ENST00000309546 LGR6Q9HBX8 967 aa26.3■■□□□ 1.8
LIME1-201ENST00000309546 MRC1P22897 1456 aa26.3■■□□□ 1.8
LIME1-201ENST00000309546 TRAPPC3LQ5T215 181 aa26.29■■□□□ 1.8
LIME1-201ENST00000309546 SLC52A2Q9HAB3 445 aa26.29■■□□□ 1.8
LIME1-201ENST00000309546 C4AP0C0L4 1744 aa26.28■■□□□ 1.8
LIME1-201ENST00000309546 RNMTO43148 476 aaKnown RBP26.28■■□□□ 1.8
LIME1-201ENST00000309546 CD2APQ9Y5K6 639 aa26.28■■□□□ 1.8
LIME1-201ENST00000309546 RC3H1Q5TC82 1133 aaKnown RBP26.27■■□□□ 1.8
LIME1-201ENST00000309546 CICQ96RK0 1608 aaPredicted RBP26.27■■□□□ 1.8
LIME1-201ENST00000309546 ADAMTS7Q9UKP4 1686 aa26.27■■□□□ 1.8
LIME1-201ENST00000309546 CFAP53Q96M91 514 aa26.26■■□□□ 1.79
LIME1-201ENST00000309546 YBX3P16989 372 aaKnown RBP eCLIP26.25■■□□□ 1.79
LIME1-201ENST00000309546 RPS6KA4O75676 772 aa26.24■■□□□ 1.79
LIME1-201ENST00000309546 ADRA2BP18089 450 aa26.24■■□□□ 1.79
LIME1-201ENST00000309546 CRKLP46109 303 aaKnown RBP26.24■■□□□ 1.79
LIME1-201ENST00000309546 ARHGEF1Q92888 912 aaKnown RBP26.24■■□□□ 1.79
LIME1-201ENST00000309546 MMP10P09238 476 aa26.23■■□□□ 1.79
LIME1-201ENST00000309546 RFC4P35249 363 aa26.23■■□□□ 1.79
LIME1-201ENST00000309546 SLC39A6Q13433 755 aa26.23■■□□□ 1.79
LIME1-201ENST00000309546 ZNF784Q8NCA9 323 aaPredicted RBP26.23■■□□□ 1.79
LIME1-201ENST00000309546 WWC3Q9ULE0 1092 aa26.21■■□□□ 1.79
LIME1-201ENST00000309546 KCPQ6ZWJ8 1503 aa26.2■■□□□ 1.79
LIME1-201ENST00000309546 PPP2R1AP30153 589 aa26.2■■□□□ 1.78
LIME1-201ENST00000309546 DNAJC10Q8IXB1 793 aa26.2■■□□□ 1.78
LIME1-201ENST00000309546 GAS2L2Q8NHY3 880 aa26.2■■□□□ 1.78
LIME1-201ENST00000309546 GRIN3BO60391 1043 aa26.19■■□□□ 1.78
LIME1-201ENST00000309546 NLGN1Q8N2Q7 840 aa26.19■■□□□ 1.78
LIME1-201ENST00000309546 GOLGB1Q14789 3259 aaKnown RBP26.19■■□□□ 1.78
LIME1-201ENST00000309546 UBR2Q8IWV8 1755 aa26.18■■□□□ 1.78
LIME1-201ENST00000309546 GYS1P13807 737 aa26.18■■□□□ 1.78
LIME1-201ENST00000309546 PRKAR2BP31323 418 aa26.17■■□□□ 1.78
LIME1-201ENST00000309546 NUDCQ9Y266 331 aa26.17■■□□□ 1.78
LIME1-201ENST00000309546 KIF13BQ9NQT8 1826 aa26.16■■□□□ 1.78
LIME1-201ENST00000309546 GNAT3A8MTJ3 354 aa26.16■■□□□ 1.78
LIME1-201ENST00000309546 TEFQ10587 303 aa26.15■■□□□ 1.78
LIME1-201ENST00000309546 INTS5Q6P9B9 1019 aaKnown RBP26.15■■□□□ 1.78
LIME1-201ENST00000309546 CCDC87Q9NVE4 849 aa26.15■■□□□ 1.78
LIME1-201ENST00000309546 SRP68Q9UHB9 627 aaKnown RBP26.15■■□□□ 1.78
LIME1-201ENST00000309546 SIPA1L3O60292 1781 aaPredicted RBP26.15■■□□□ 1.78
LIME1-201ENST00000309546 U2AF1L5P0DN76 240 aaPredicted RBP26.14■■□□□ 1.78
LIME1-201ENST00000309546 U2AF1Q01081 240 aaKnown RBP eCLIP26.14■■□□□ 1.78
LIME1-201ENST00000309546 TTC5Q8N0Z6 440 aa26.14■■□□□ 1.78
LIME1-201ENST00000309546 RSPH6AQ9H0K4 717 aa26.14■■□□□ 1.78
LIME1-201ENST00000309546 N4BP2Q86UW6 1770 aaPredicted RBP26.14■■□□□ 1.78
LIME1-201ENST00000309546 PHACTR3Q96KR7 559 aa26.13■■□□□ 1.77
LIME1-201ENST00000309546 USP42Q9H9J4 1324 aaKnown RBP26.13■■□□□ 1.77
LIME1-201ENST00000309546 KIAA1551Q9HCM1 1747 aa26.12■■□□□ 1.77
LIME1-201ENST00000309546 IL17REQ8NFR9 667 aa26.12■■□□□ 1.77
LIME1-201ENST00000309546 PARP3Q9Y6F1 533 aa26.12■■□□□ 1.77
LIME1-201ENST00000309546 C10orf71Q711Q0 1435 aa26.12■■□□□ 1.77
LIME1-201ENST00000309546 CYP19A1P11511 503 aaPredicted RBP26.11■■□□□ 1.77
LIME1-201ENST00000309546 PXDNLA1KZ92 1463 aa26.11■■□□□ 1.77
LIME1-201ENST00000309546 SOS1Q07889 1333 aaPredicted RBP26.1■■□□□ 1.77
LIME1-201ENST00000309546 FKBP8Q14318 412 aa26.09■■□□□ 1.77
LIME1-201ENST00000309546 VSIG10Q8N0Z9 540 aa26.09■■□□□ 1.77
LIME1-201ENST00000309546 ZBTB1Q9Y2K1 713 aa26.09■■□□□ 1.77
LIME1-201ENST00000309546 COL15A1P39059 1388 aa26.07■■□□□ 1.76
LIME1-201ENST00000309546 ZPR1O75312 459 aa26.07■■□□□ 1.76
LIME1-201ENST00000309546 USPL1Q5W0Q7 1092 aa26.06■■□□□ 1.76
LIME1-201ENST00000309546 ZNF790Q6PG37 636 aa26.06■■□□□ 1.76
LIME1-201ENST00000309546 CEMIPQ8WUJ3 1361 aa26.06■■□□□ 1.76
LIME1-201ENST00000309546 CANXP27824 592 aaKnown RBP26.05■■□□□ 1.76
LIME1-201ENST00000309546 ZNF496Q96IT1 587 aaPredicted RBP26.05■■□□□ 1.76
LIME1-201ENST00000309546 A0A0G2JLW4 131 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms