RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 TMOD3Q9NYL9 352 aa28.54■■■□□ 2.16
SMCO4-201ENST00000298966 APLP1P51693 650 aa28.53■■■□□ 2.16
SMCO4-201ENST00000298966 EMILIN1Q9Y6C2 1016 aa28.52■■■□□ 2.16
SMCO4-201ENST00000298966 MMP10P09238 476 aa28.51■■■□□ 2.15
SMCO4-201ENST00000298966 ATP6V1AP38606 617 aa28.51■■■□□ 2.15
SMCO4-201ENST00000298966 POLR3GLQ9BT43 218 aa28.51■■■□□ 2.15
SMCO4-201ENST00000298966 NCAPD2Q15021 1401 aa28.51■■■□□ 2.15
SMCO4-201ENST00000298966 ITPK1Q13572 414 aa28.5■■■□□ 2.15
SMCO4-201ENST00000298966 KIF13BQ9NQT8 1826 aa28.5■■■□□ 2.15
SMCO4-201ENST00000298966 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.49■■■□□ 2.15
SMCO4-201ENST00000298966 ASAP1Q9ULH1 1129 aa28.49■■■□□ 2.15
SMCO4-201ENST00000298966 PXDNLA1KZ92 1463 aa28.48■■■□□ 2.15
SMCO4-201ENST00000298966 PPM1GO15355 546 aaPredicted RBP28.48■■■□□ 2.15
SMCO4-201ENST00000298966 ANP32CO43423 234 aa28.48■■■□□ 2.15
SMCO4-201ENST00000298966 TOMM70O94826 608 aa28.47■■■□□ 2.15
SMCO4-201ENST00000298966 TGFB2P61812 414 aa28.47■■■□□ 2.15
SMCO4-201ENST00000298966 BCS1LQ9Y276 419 aa28.47■■■□□ 2.15
SMCO4-201ENST00000298966 N4BP2Q86UW6 1770 aaPredicted RBP28.47■■■□□ 2.15
SMCO4-201ENST00000298966 IFNL2Q8IZJ0 200 aa28.46■■■□□ 2.15
SMCO4-201ENST00000298966 KIAA1551Q9HCM1 1747 aa28.46■■■□□ 2.15
SMCO4-201ENST00000298966 TRAPPC3LQ5T215 181 aa28.44■■■□□ 2.14
SMCO4-201ENST00000298966 NLGN1Q8N2Q7 840 aa28.44■■■□□ 2.14
SMCO4-201ENST00000298966 RTCBQ9Y3I0 505 aaKnown RBP28.44■■■□□ 2.14
SMCO4-201ENST00000298966 PHKG2P15735 406 aa28.43■■■□□ 2.14
SMCO4-201ENST00000298966 ARHGAP27Q6ZUM4 889 aa28.43■■■□□ 2.14
SMCO4-201ENST00000298966 EYA1Q99502 592 aa28.43■■■□□ 2.14
SMCO4-201ENST00000298966 ATG3Q9NT62 314 aa28.43■■■□□ 2.14
SMCO4-201ENST00000298966 ANKRD26Q9UPS8 1709 aa28.43■■■□□ 2.14
SMCO4-201ENST00000298966 A0A0G2JLW4 131 aa28.42■■■□□ 2.14
SMCO4-201ENST00000298966 CARD14Q9BXL6 1004 aa28.41■■■□□ 2.14
SMCO4-201ENST00000298966 CCDC87Q9NVE4 849 aa28.41■■■□□ 2.14
SMCO4-201ENST00000298966 C10orf71Q711Q0 1435 aa28.41■■■□□ 2.14
SMCO4-201ENST00000298966 FCHSD2O94868 740 aa28.39■■■□□ 2.14
SMCO4-201ENST00000298966 DNAJC5GQ8N7S2 189 aa28.39■■■□□ 2.14
SMCO4-201ENST00000298966 NMRK2Q9NPI5 230 aa28.38■■■□□ 2.13
SMCO4-201ENST00000298966 DPEP1P16444 411 aa28.37■■■□□ 2.13
SMCO4-201ENST00000298966 ADRA2BP18089 450 aa28.37■■■□□ 2.13
SMCO4-201ENST00000298966 C4AP0C0L4 1744 aa28.37■■■□□ 2.13
SMCO4-201ENST00000298966 KDRP35968 1356 aa28.37■■■□□ 2.13
SMCO4-201ENST00000298966 RBM42Q9BTD8 480 aaKnown RBP28.36■■■□□ 2.13
SMCO4-201ENST00000298966 PARP3Q9Y6F1 533 aa28.36■■■□□ 2.13
SMCO4-201ENST00000298966 ZNF831Q5JPB2 1677 aa28.35■■■□□ 2.13
SMCO4-201ENST00000298966 RC3H1Q5TC82 1133 aaKnown RBP28.35■■■□□ 2.13
SMCO4-201ENST00000298966 C16orf71Q8IYS4 520 aaPredicted RBP28.35■■■□□ 2.13
SMCO4-201ENST00000298966 ARHGEF1Q92888 912 aaKnown RBP28.35■■■□□ 2.13
SMCO4-201ENST00000298966 BRCA1P38398 1863 aaKnown RBP28.35■■■□□ 2.13
SMCO4-201ENST00000298966 WDR90Q96KV7 1748 aa28.35■■■□□ 2.13
SMCO4-201ENST00000298966 RFC4P35249 363 aa28.34■■■□□ 2.13
SMCO4-201ENST00000298966 CCER2I3L3R5 266 aa28.33■■■□□ 2.13
SMCO4-201ENST00000298966 GYS1P13807 737 aa28.33■■■□□ 2.13
SMCO4-201ENST00000298966 RBM46Q8TBY0 533 aaKnown RBP28.33■■■□□ 2.13
SMCO4-201ENST00000298966 COL5A3P25940 1745 aaPredicted RBP28.32■■■□□ 2.12
SMCO4-201ENST00000298966 ARFGEF1Q9Y6D6 1849 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 ERVV-2B6SEH9 535 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 RPS6KA4O75676 772 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 SLC4A9Q96Q91 983 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 PANK3Q9H999 370 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 CNTNAP4Q9C0A0 1308 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 PLEKHG2Q9H7P9 1386 aa28.32■■■□□ 2.12
SMCO4-201ENST00000298966 C9orf131Q5VYM1 1079 aa28.31■■■□□ 2.12
SMCO4-201ENST00000298966 HSP90AB1P08238 724 aaKnown RBP28.3■■■□□ 2.12
SMCO4-201ENST00000298966 POLKQ9UBT6 870 aa28.3■■■□□ 2.12
SMCO4-201ENST00000298966 NPC1L1Q9UHC9 1359 aa28.29■■■□□ 2.12
SMCO4-201ENST00000298966 PER1O15534 1290 aaPredicted RBP28.29■■■□□ 2.12
SMCO4-201ENST00000298966 EIF4A2Q14240 407 aaKnown RBP28.28■■■□□ 2.12
SMCO4-201ENST00000298966 DCAF5Q96JK2 942 aa28.28■■■□□ 2.12
SMCO4-201ENST00000298966 PRKRIP1Q9H875 184 aaPredicted RBP28.28■■■□□ 2.12
SMCO4-201ENST00000298966 PIM2Q9P1W9 311 aa28.28■■■□□ 2.12
SMCO4-201ENST00000298966 MYH14Q7Z406 1995 aaKnown RBP28.26■■■□□ 2.11
SMCO4-201ENST00000298966 KDM2BQ8NHM5 1336 aa28.26■■■□□ 2.11
SMCO4-201ENST00000298966 FSTL1Q12841 308 aa28.26■■■□□ 2.11
SMCO4-201ENST00000298966 KCNA3P22001 575 aa28.25■■■□□ 2.11
SMCO4-201ENST00000298966 RALBP1Q15311 655 aa28.25■■■□□ 2.11
SMCO4-201ENST00000298966 KLRG1Q96E93 195 aa28.25■■■□□ 2.11
SMCO4-201ENST00000298966 KNSTRNQ9Y448 316 aa28.25■■■□□ 2.11
SMCO4-201ENST00000298966 CABP4P57796 275 aa28.24■■■□□ 2.11
SMCO4-201ENST00000298966 PLEKHO1Q53GL0 409 aaPredicted RBP28.24■■■□□ 2.11
SMCO4-201ENST00000298966 DALRD3Q5D0E6 543 aaKnown RBP28.24■■■□□ 2.11
SMCO4-201ENST00000298966 HTRA3P83110 453 aa28.22■■■□□ 2.11
SMCO4-201ENST00000298966 RNF181Q9P0P0 153 aa28.22■■■□□ 2.11
SMCO4-201ENST00000298966 KCPQ6ZWJ8 1503 aa28.22■■■□□ 2.11
SMCO4-201ENST00000298966 TNNT2P45379 298 aaPredicted RBP28.21■■■□□ 2.11
SMCO4-201ENST00000298966 ZNF530Q6P9A1 599 aaPredicted RBP28.2■■■□□ 2.1
SMCO4-201ENST00000298966 JMYQ8N9B5 988 aa28.2■■■□□ 2.1
SMCO4-201ENST00000298966 KDM6AO15550 1401 aaPredicted RBP28.19■■■□□ 2.1
SMCO4-201ENST00000298966 PTCD1O75127 700 aaKnown RBP28.18■■■□□ 2.1
SMCO4-201ENST00000298966 CRKLP46109 303 aaKnown RBP28.18■■■□□ 2.1
SMCO4-201ENST00000298966 AMOTQ4VCS5 1084 aa28.18■■■□□ 2.1
SMCO4-201ENST00000298966 RRAGCQ9HB90 399 aa28.18■■■□□ 2.1
SMCO4-201ENST00000298966 SRP68Q9UHB9 627 aaKnown RBP28.18■■■□□ 2.1
SMCO4-201ENST00000298966 TNRC6CQ9HCJ0 1690 aaKnown RBP28.18■■■□□ 2.1
SMCO4-201ENST00000298966 FKBP8Q14318 412 aa28.17■■■□□ 2.1
SMCO4-201ENST00000298966 SBF1O95248 1867 aa28.17■■■□□ 2.1
SMCO4-201ENST00000298966 USP42Q9H9J4 1324 aaKnown RBP28.17■■■□□ 2.1
SMCO4-201ENST00000298966 MTHFSP49914 203 aa28.16■■■□□ 2.1
SMCO4-201ENST00000298966 DDR1Q08345 913 aa28.16■■■□□ 2.1
SMCO4-201ENST00000298966 COL13A1Q5TAT6 717 aaPredicted RBP28.16■■■□□ 2.1
SMCO4-201ENST00000298966 C1orf141Q5JVX7 400 aa28.15■■■□□ 2.1
SMCO4-201ENST00000298966 CHRNA5P30532 468 aa28.14■■■□□ 2.1
SMCO4-201ENST00000298966 AMER1Q5JTC6 1135 aaPredicted RBP28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms