RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 STRN4Q9NRL3 753 aa18.39■□□□□ 0.53
SHH-201ENST00000297261 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.39■□□□□ 0.53
SHH-201ENST00000297261 DEPDC5O75140 1603 aa18.38■□□□□ 0.53
SHH-201ENST00000297261 PLEKHG3A1L390 1219 aa18.38■□□□□ 0.53
SHH-201ENST00000297261 NEXNQ0ZGT2 675 aa18.38■□□□□ 0.53
SHH-201ENST00000297261 DDX58O95786 925 aaKnown RBP18.37■□□□□ 0.53
SHH-201ENST00000297261 CCDC112Q8NEF3 446 aa18.37■□□□□ 0.53
SHH-201ENST00000297261 FLT4P35916 1363 aa18.37■□□□□ 0.53
SHH-201ENST00000297261 LETM1O95202 739 aaPredicted RBP18.37■□□□□ 0.53
SHH-201ENST00000297261 UBTFL1P0CB47 393 aaPredicted RBP18.37■□□□□ 0.53
SHH-201ENST00000297261 IFIT2P09913 472 aaKnown RBP18.37■□□□□ 0.53
SHH-201ENST00000297261 CCDC73Q6ZRK6 1079 aa18.37■□□□□ 0.53
SHH-201ENST00000297261 ARGLU1Q9NWB6 273 aaPredicted RBP18.37■□□□□ 0.53
SHH-201ENST00000297261 TRIM35Q9UPQ4 493 aa18.37■□□□□ 0.53
SHH-201ENST00000297261 BAG4O95429 457 aaKnown RBP18.36■□□□□ 0.53
SHH-201ENST00000297261 SETBP1Q9Y6X0 1596 aa18.36■□□□□ 0.53
SHH-201ENST00000297261 ALKQ9UM73 1620 aa18.36■□□□□ 0.53
SHH-201ENST00000297261 TOM1L2Q6ZVM7 507 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 FMNL2Q96PY5 1086 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 NLRP1Q9C000 1473 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 WDR33Q9C0J8 1336 aaKnown RBP18.35■□□□□ 0.53
SHH-201ENST00000297261 BTBD11A6QL63 1104 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 RLBP1P12271 317 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 SDF4Q9BRK5 362 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 GNAI3P08754 354 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 UPF3BQ9BZI7 483 aaKnown RBP18.35■□□□□ 0.53
SHH-201ENST00000297261 PRR36Q9H6K5 1346 aa18.35■□□□□ 0.53
SHH-201ENST00000297261 TAF7Q15545 349 aaPredicted RBP18.35■□□□□ 0.53
SHH-201ENST00000297261 RBM27Q9P2N5 1060 aaKnown RBP18.35■□□□□ 0.53
SHH-201ENST00000297261 CCDC34Q96HJ3 373 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 CLTCQ00610 1675 aaKnown RBP18.34■□□□□ 0.53
SHH-201ENST00000297261 PES1O00541 588 aaKnown RBP18.34■□□□□ 0.53
SHH-201ENST00000297261 CCDC192P0DO97 292 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 C8orf58Q8NAV2 365 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 EYA1Q99502 592 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 USP25Q9UHP3 1055 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 NEXMIFQ5QGS0 1516 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 MPRIPQ6WCQ1 1025 aa18.34■□□□□ 0.53
SHH-201ENST00000297261 SYTL4Q96C24 671 aaPredicted RBP18.34■□□□□ 0.53
SHH-201ENST00000297261 RIC3Q7Z5B4 369 aa18.33■□□□□ 0.53
SHH-201ENST00000297261 CADPS2Q86UW7 1296 aa18.33■□□□□ 0.53
SHH-201ENST00000297261 TSPYL6Q8N831 410 aa18.33■□□□□ 0.53
SHH-201ENST00000297261 SURF6O75683 361 aaKnown RBP18.33■□□□□ 0.53
SHH-201ENST00000297261 CCT4P50991 539 aaKnown RBP18.33■□□□□ 0.53
SHH-201ENST00000297261 MTHFSDQ2M296 383 aaKnown RBP18.33■□□□□ 0.52
SHH-201ENST00000297261 KLHL40Q2TBA0 621 aa18.33■□□□□ 0.52
SHH-201ENST00000297261 RNF20Q5VTR2 975 aa18.33■□□□□ 0.52
SHH-201ENST00000297261 GDPD2Q9HCC8 539 aa18.33■□□□□ 0.52
SHH-201ENST00000297261 SPG7Q9UQ90 795 aa18.33■□□□□ 0.52
SHH-201ENST00000297261 NOC3LQ8WTT2 800 aaKnown RBP18.32■□□□□ 0.52
SHH-201ENST00000297261 ORAI2Q96SN7 254 aa18.32■□□□□ 0.52
SHH-201ENST00000297261 MROH1Q8NDA8 1641 aa18.32■□□□□ 0.52
SHH-201ENST00000297261 POLR1AO95602 1720 aaPredicted RBP18.32■□□□□ 0.52
SHH-201ENST00000297261 QRICH2Q9H0J4 1663 aa18.32■□□□□ 0.52
SHH-201ENST00000297261 ERICH4A6NGS2 130 aa18.32■□□□□ 0.52
SHH-201ENST00000297261 GNAI2P04899 355 aa18.32■□□□□ 0.52
SHH-201ENST00000297261 C19orf44Q9H6X5 657 aa18.32■□□□□ 0.52
SHH-201ENST00000297261 CEBPZQ03701 1054 aaKnown RBP18.31■□□□□ 0.52
SHH-201ENST00000297261 F6X3S4 739 aa18.31■□□□□ 0.52
SHH-201ENST00000297261 ZNF521Q96K83 1311 aa18.31■□□□□ 0.52
SHH-201ENST00000297261 AGLP35573 1532 aa18.31■□□□□ 0.52
SHH-201ENST00000297261 ATP7BP35670 1465 aa18.31■□□□□ 0.52
SHH-201ENST00000297261 ANKRD24Q8TF21 1146 aa18.31■□□□□ 0.52
SHH-201ENST00000297261 TOMM22Q9NS69 142 aa18.3■□□□□ 0.52
SHH-201ENST00000297261 FAM135BQ49AJ0 1406 aa18.3■□□□□ 0.52
SHH-201ENST00000297261 HOXC9P31274 260 aa18.3■□□□□ 0.52
SHH-201ENST00000297261 KRT24Q2M2I5 525 aa18.3■□□□□ 0.52
SHH-201ENST00000297261 SPDYE4A6NLX3 237 aa18.3■□□□□ 0.52
SHH-201ENST00000297261 PIK3C2BO00750 1634 aa18.3■□□□□ 0.52
SHH-201ENST00000297261 AMOTQ4VCS5 1084 aa18.29■□□□□ 0.52
SHH-201ENST00000297261 DDX54Q8TDD1 881 aaKnown RBP18.29■□□□□ 0.52
SHH-201ENST00000297261 FILIP1Q7Z7B0 1213 aa18.29■□□□□ 0.52
SHH-201ENST00000297261 RBM42Q9BTD8 480 aaKnown RBP18.29■□□□□ 0.52
SHH-201ENST00000297261 NRXN1Q9ULB1 1477 aa18.29■□□□□ 0.52
SHH-201ENST00000297261 VAMP4O75379 141 aa18.29■□□□□ 0.52
SHH-201ENST00000297261 CHRNA2Q15822 529 aa18.29■□□□□ 0.52
SHH-201ENST00000297261 TBC1D9Q6ZT07 1266 aa18.29■□□□□ 0.52
SHH-201ENST00000297261 LRRC59Q96AG4 307 aaKnown RBP18.29■□□□□ 0.52
SHH-201ENST00000297261 IQGAP1P46940 1657 aa18.28■□□□□ 0.52
SHH-201ENST00000297261 TAF7LQ5H9L4 462 aa18.28■□□□□ 0.52
SHH-201ENST00000297261 SRCIN1Q9C0H9 1055 aa18.28■□□□□ 0.52
SHH-201ENST00000297261 TNMDQ9H2S6 317 aa18.28■□□□□ 0.52
SHH-201ENST00000297261 TULP4Q9NRJ4 1543 aa18.28■□□□□ 0.52
SHH-201ENST00000297261 DYNC1I1O14576 645 aa18.28■□□□□ 0.52
SHH-201ENST00000297261 GCP02774 474 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 CABP4P57796 275 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 ZSCAN23Q3MJ62 389 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 CGNQ9P2M7 1197 aaKnown RBP18.27■□□□□ 0.52
SHH-201ENST00000297261 MROH2AA6NES4 1674 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 ZC3H13Q5T200 1668 aaKnown RBP18.27■□□□□ 0.52
SHH-201ENST00000297261 MAP4K4O95819 1239 aaPredicted RBP18.27■□□□□ 0.52
SHH-201ENST00000297261 RASSF8Q8NHQ8 419 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 CPLX1O14810 134 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 SMARCA5O60264 1052 aaPredicted RBP18.27■□□□□ 0.52
SHH-201ENST00000297261 PPP4R3BQ5MIZ7 849 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 PLEKHF1Q96S99 279 aa18.27■□□□□ 0.52
SHH-201ENST00000297261 SBNO1A3KN83 1393 aa18.26■□□□□ 0.51
SHH-201ENST00000297261 MRPL50Q8N5N7 158 aaKnown RBP18.26■□□□□ 0.51
SHH-201ENST00000297261 ZNF830Q96NB3 372 aaPredicted RBP18.26■□□□□ 0.51
SHH-201ENST00000297261 SMC2O95347 1197 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms