RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 THUMPD2Q9BTF0 503 aaKnown RBP16.85■□□□□ 0.29
SS18-202ENST00000269138 ATG3Q9NT62 314 aa16.85■□□□□ 0.29
SS18-202ENST00000269138 SCN11AQ9UI33 1791 aa16.84■□□□□ 0.29
SS18-202ENST00000269138 ADAMTS7Q9UKP4 1686 aa16.84■□□□□ 0.29
SS18-202ENST00000269138 CEMIPQ8WUJ3 1361 aa16.84■□□□□ 0.29
SS18-202ENST00000269138 HTATSF1O43719 755 aaKnown RBP16.84■□□□□ 0.29
SS18-202ENST00000269138 KCNQ4P56696 695 aa16.84■□□□□ 0.29
SS18-202ENST00000269138 TXNRD1Q16881 649 aa16.84■□□□□ 0.29
SS18-202ENST00000269138 TEFQ10587 303 aa16.82■□□□□ 0.28
SS18-202ENST00000269138 SLC39A6Q13433 755 aa16.82■□□□□ 0.28
SS18-202ENST00000269138 MRC1P22897 1456 aa16.82■□□□□ 0.28
SS18-202ENST00000269138 PALLDQ8WX93 1383 aa16.82■□□□□ 0.28
SS18-202ENST00000269138 SMARCC1Q92922 1105 aaPredicted RBP16.81■□□□□ 0.28
SS18-202ENST00000269138 LRRC4BQ9NT99 713 aa16.81■□□□□ 0.28
SS18-202ENST00000269138 TRIM35Q9UPQ4 493 aa16.81■□□□□ 0.28
SS18-202ENST00000269138 DLG5Q8TDM6 1919 aa16.8■□□□□ 0.28
SS18-202ENST00000269138 CCNL1Q9UK58 526 aaPredicted RBP16.79■□□□□ 0.28
SS18-202ENST00000269138 VIRMAQ69YN4 1812 aaKnown RBP16.78■□□□□ 0.28
SS18-202ENST00000269138 KCNQ3O43525 872 aa16.78■□□□□ 0.28
SS18-202ENST00000269138 PTCD1O75127 700 aaKnown RBP16.78■□□□□ 0.28
SS18-202ENST00000269138 SLC4A9Q96Q91 983 aa16.78■□□□□ 0.28
SS18-202ENST00000269138 RBM42Q9BTD8 480 aaKnown RBP16.78■□□□□ 0.28
SS18-202ENST00000269138 MIS18AQ9NYP9 233 aa16.78■□□□□ 0.28
SS18-202ENST00000269138 LOC102724428A0A0B4J2F2 783 aa16.77■□□□□ 0.28
SS18-202ENST00000269138 SIK1P57059 783 aa16.77■□□□□ 0.28
SS18-202ENST00000269138 LMOD3Q0VAK6 560 aa16.77■□□□□ 0.28
SS18-202ENST00000269138 TAF7Q15545 349 aaPredicted RBP16.77■□□□□ 0.28
SS18-202ENST00000269138 BTBD11A6QL63 1104 aa16.76■□□□□ 0.27
SS18-202ENST00000269138 SLC27A3Q5K4L6 730 aa16.76■□□□□ 0.27
SS18-202ENST00000269138 RGPD3A6NKT7 1758 aaPredicted RBP16.76■□□□□ 0.27
SS18-202ENST00000269138 RGPD4Q7Z3J3 1758 aa16.76■□□□□ 0.27
SS18-202ENST00000269138 RREB1Q92766 1687 aa16.76■□□□□ 0.27
SS18-202ENST00000269138 ITPK1Q13572 414 aa16.75■□□□□ 0.27
SS18-202ENST00000269138 ANO8Q9HCE9 1232 aaPredicted RBP16.75■□□□□ 0.27
SS18-202ENST00000269138 SALL2Q9Y467 1007 aaPredicted RBP16.75■□□□□ 0.27
SS18-202ENST00000269138 LY75O60449 1722 aa16.75■□□□□ 0.27
SS18-202ENST00000269138 ATP6V1AP38606 617 aa16.75■□□□□ 0.27
SS18-202ENST00000269138 ZNF790Q6PG37 636 aa16.75■□□□□ 0.27
SS18-202ENST00000269138 NUP188Q5SRE5 1749 aa16.74■□□□□ 0.27
SS18-202ENST00000269138 SIPA1L3O60292 1781 aaPredicted RBP16.74■□□□□ 0.27
SS18-202ENST00000269138 TTC5Q8N0Z6 440 aa16.73■□□□□ 0.27
SS18-202ENST00000269138 LINC00116Q8NCU8 138 aa16.73■□□□□ 0.27
SS18-202ENST00000269138 ZNF496Q96IT1 587 aaPredicted RBP16.73■□□□□ 0.27
SS18-202ENST00000269138 ZNF827Q17R98 1081 aa16.72■□□□□ 0.27
SS18-202ENST00000269138 KCPQ6ZWJ8 1503 aa16.72■□□□□ 0.27
SS18-202ENST00000269138 PAPPAQ13219 1627 aa16.71■□□□□ 0.27
SS18-202ENST00000269138 NBPF14Q5TI25 921 aa16.71■□□□□ 0.27
SS18-202ENST00000269138 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.27
SS18-202ENST00000269138 PSDA5PKW4 1024 aaPredicted RBP16.7■□□□□ 0.26
SS18-202ENST00000269138 R3HDM1Q15032 1099 aaKnown RBP16.7■□□□□ 0.26
SS18-202ENST00000269138 WWC1Q8IX03 1113 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 DNAJC10Q8IXB1 793 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 SLC15A2Q16348 729 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 CCDC27Q2M243 656 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 STK32BQ9NY57 414 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 TSPYL4Q9UJ04 414 aa16.7■□□□□ 0.26
SS18-202ENST00000269138 CHL1O00533 1208 aa16.69■□□□□ 0.26
SS18-202ENST00000269138 FMNL2Q96PY5 1086 aa16.69■□□□□ 0.26
SS18-202ENST00000269138 PRAMEF22A3QJZ6 481 aa16.68■□□□□ 0.26
SS18-202ENST00000269138 NCBP3Q53F19 620 aaKnown RBP16.68■□□□□ 0.26
SS18-202ENST00000269138 SMIM5Q71RC9 77 aa16.68■□□□□ 0.26
SS18-202ENST00000269138 HEG1Q9ULI3 1381 aa16.68■□□□□ 0.26
SS18-202ENST00000269138 ZNF853P0CG23 659 aa16.67■□□□□ 0.26
SS18-202ENST00000269138 EIF4A1P60842 406 aaKnown RBP16.67■□□□□ 0.26
SS18-202ENST00000269138 VSIG10Q8N0Z9 540 aa16.67■□□□□ 0.26
SS18-202ENST00000269138 UBR2Q8IWV8 1755 aa16.67■□□□□ 0.26
SS18-202ENST00000269138 AMIGO3Q86WK7 504 aa16.66■□□□□ 0.26
SS18-202ENST00000269138 CFAP44Q96MT7 982 aa16.66■□□□□ 0.26
SS18-202ENST00000269138 PDGFDQ9GZP0 370 aaPredicted RBP16.66■□□□□ 0.26
SS18-202ENST00000269138 BABAM1Q9NWV8 329 aa16.66■□□□□ 0.26
SS18-202ENST00000269138 C5P01031 1676 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 CYP19A1P11511 503 aaPredicted RBP16.65■□□□□ 0.26
SS18-202ENST00000269138 MBIPQ9NS73 344 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 TFCP2L1Q9NZI6 479 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 TJP1Q07157 1748 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 TAF1LQ8IZX4 1826 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 CRKLP46109 303 aaKnown RBP16.65■□□□□ 0.26
SS18-202ENST00000269138 CALD1Q05682 793 aaKnown RBP16.65■□□□□ 0.26
SS18-202ENST00000269138 AK7Q96M32 723 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 IFT57Q9NWB7 429 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 USP16Q9Y5T5 823 aa16.65■□□□□ 0.26
SS18-202ENST00000269138 ZNF831Q5JPB2 1677 aa16.64■□□□□ 0.25
SS18-202ENST00000269138 C4BP0C0L5 1744 aa16.64■□□□□ 0.25
SS18-202ENST00000269138 KDM3BQ7LBC6 1761 aa16.64■□□□□ 0.25
SS18-202ENST00000269138 GNPATO15228 680 aa16.64■□□□□ 0.25
SS18-202ENST00000269138 SNRPA1P09661 255 aaKnown RBP16.64■□□□□ 0.25
SS18-202ENST00000269138 GNAI1P63096 354 aa16.64■□□□□ 0.25
SS18-202ENST00000269138 KRT24Q2M2I5 525 aa16.64■□□□□ 0.25
SS18-202ENST00000269138 INTS5Q6P9B9 1019 aaKnown RBP16.64■□□□□ 0.25
SS18-202ENST00000269138 GIGYF1O75420 1035 aaPredicted RBP16.63■□□□□ 0.25
SS18-202ENST00000269138 RC3H1Q5TC82 1133 aaKnown RBP16.63■□□□□ 0.25
SS18-202ENST00000269138 WDR63Q8IWG1 891 aa16.63■□□□□ 0.25
SS18-202ENST00000269138 NGEFQ8N5V2 710 aa16.63■□□□□ 0.25
SS18-202ENST00000269138 CNTNAP4Q9C0A0 1308 aa16.63■□□□□ 0.25
SS18-202ENST00000269138 SPINK5Q9NQ38 1064 aaPredicted RBP16.63■□□□□ 0.25
SS18-202ENST00000269138 PNPLA7Q6ZV29 1317 aa16.62■□□□□ 0.25
SS18-202ENST00000269138 ZNF521Q96K83 1311 aa16.62■□□□□ 0.25
SS18-202ENST00000269138 TSR2Q969E8 191 aaKnown RBP16.62■□□□□ 0.25
SS18-202ENST00000269138 TEX13AQ9BXU3 409 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms