RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 UTRNP46939 3433 aa28.69■■■□□ 2.18
NEDD8-201ENST00000250495 AMER1Q5JTC6 1135 aaPredicted RBP28.69■■■□□ 2.18
NEDD8-201ENST00000250495 CD2APQ9Y5K6 639 aa28.69■■■□□ 2.18
NEDD8-201ENST00000250495 ITPK1Q13572 414 aa28.68■■■□□ 2.18
NEDD8-201ENST00000250495 AMIGO3Q86WK7 504 aa28.68■■■□□ 2.18
NEDD8-201ENST00000250495 UBR3Q6ZT12 1888 aa28.68■■■□□ 2.18
NEDD8-201ENST00000250495 SULT6B1Q6IMI4 303 aa28.67■■■□□ 2.18
NEDD8-201ENST00000250495 AEBP1Q8IUX7 1158 aa28.67■■■□□ 2.18
NEDD8-201ENST00000250495 GRIN3BO60391 1043 aa28.66■■■□□ 2.18
NEDD8-201ENST00000250495 IL13P35225 146 aa28.66■■■□□ 2.18
NEDD8-201ENST00000250495 C1orf141Q5JVX7 400 aa28.66■■■□□ 2.18
NEDD8-201ENST00000250495 GNPATO15228 680 aa28.65■■■□□ 2.18
NEDD8-201ENST00000250495 MTHFSP49914 203 aa28.65■■■□□ 2.18
NEDD8-201ENST00000250495 CABP4P57796 275 aa28.65■■■□□ 2.18
NEDD8-201ENST00000250495 SMIM5Q71RC9 77 aa28.65■■■□□ 2.18
NEDD8-201ENST00000250495 RBM42Q9BTD8 480 aaKnown RBP28.64■■■□□ 2.18
NEDD8-201ENST00000250495 KDRP35968 1356 aa28.61■■■□□ 2.17
NEDD8-201ENST00000250495 PER1O15534 1290 aaPredicted RBP28.6■■■□□ 2.17
NEDD8-201ENST00000250495 RTCBQ9Y3I0 505 aaKnown RBP28.6■■■□□ 2.17
NEDD8-201ENST00000250495 KDM6AO15550 1401 aaPredicted RBP28.6■■■□□ 2.17
NEDD8-201ENST00000250495 YBX3P16989 372 aaKnown RBP eCLIP28.59■■■□□ 2.17
NEDD8-201ENST00000250495 TRAPPC3LQ5T215 181 aa28.59■■■□□ 2.17
NEDD8-201ENST00000250495 RC3H1Q5TC82 1133 aaKnown RBP28.59■■■□□ 2.17
NEDD8-201ENST00000250495 SLC4A9Q96Q91 983 aa28.59■■■□□ 2.17
NEDD8-201ENST00000250495 NFATC2IPQ8NCF5 419 aa28.57■■■□□ 2.16
NEDD8-201ENST00000250495 ZNF831Q5JPB2 1677 aa28.56■■■□□ 2.16
NEDD8-201ENST00000250495 ADRA2BP18089 450 aa28.54■■■□□ 2.16
NEDD8-201ENST00000250495 AKAP4Q5JQC9 854 aa28.54■■■□□ 2.16
NEDD8-201ENST00000250495 CC2D1BQ5T0F9 858 aaKnown RBP28.54■■■□□ 2.16
NEDD8-201ENST00000250495 CNTNAP4Q9C0A0 1308 aa28.53■■■□□ 2.16
NEDD8-201ENST00000250495 PTCD1O75127 700 aaKnown RBP28.52■■■□□ 2.16
NEDD8-201ENST00000250495 RPS6KA4O75676 772 aa28.52■■■□□ 2.16
NEDD8-201ENST00000250495 NLGN1Q8N2Q7 840 aa28.52■■■□□ 2.16
NEDD8-201ENST00000250495 DIAPH1O60610 1272 aaKnown RBP28.51■■■□□ 2.15
NEDD8-201ENST00000250495 ARHGEF1Q92888 912 aaKnown RBP28.51■■■□□ 2.15
NEDD8-201ENST00000250495 MMP10P09238 476 aa28.5■■■□□ 2.15
NEDD8-201ENST00000250495 HMOX1P09601 288 aa28.5■■■□□ 2.15
NEDD8-201ENST00000250495 RFC4P35249 363 aa28.49■■■□□ 2.15
NEDD8-201ENST00000250495 NPC1L1Q9UHC9 1359 aa28.47■■■□□ 2.15
NEDD8-201ENST00000250495 COL5A3P25940 1745 aaPredicted RBP28.46■■■□□ 2.15
NEDD8-201ENST00000250495 SLC52A2Q9HAB3 445 aa28.46■■■□□ 2.15
NEDD8-201ENST00000250495 SCN11AQ9UI33 1791 aa28.46■■■□□ 2.15
NEDD8-201ENST00000250495 GOLGB1Q14789 3259 aaKnown RBP28.46■■■□□ 2.15
NEDD8-201ENST00000250495 LGR6Q9HBX8 967 aa28.45■■■□□ 2.14
NEDD8-201ENST00000250495 MYH14Q7Z406 1995 aaKnown RBP28.44■■■□□ 2.14
NEDD8-201ENST00000250495 RNMTO43148 476 aaKnown RBP28.43■■■□□ 2.14
NEDD8-201ENST00000250495 GYS1P13807 737 aa28.43■■■□□ 2.14
NEDD8-201ENST00000250495 CRKLP46109 303 aaKnown RBP28.43■■■□□ 2.14
NEDD8-201ENST00000250495 C1QTNF8P60827 252 aa28.43■■■□□ 2.14
NEDD8-201ENST00000250495 CNGB1Q14028 1251 aaPredicted RBP28.42■■■□□ 2.14
NEDD8-201ENST00000250495 MTHFSDQ2M296 383 aaKnown RBP28.42■■■□□ 2.14
NEDD8-201ENST00000250495 TGFB2P61812 414 aa28.41■■■□□ 2.14
NEDD8-201ENST00000250495 GIGYF1O75420 1035 aaPredicted RBP28.4■■■□□ 2.14
NEDD8-201ENST00000250495 CCDC87Q9NVE4 849 aa28.4■■■□□ 2.14
NEDD8-201ENST00000250495 PARP3Q9Y6F1 533 aa28.4■■■□□ 2.14
NEDD8-201ENST00000250495 WWC3Q9ULE0 1092 aa28.39■■■□□ 2.14
NEDD8-201ENST00000250495 U2SURPO15042 1029 aaKnown RBP28.37■■■□□ 2.13
NEDD8-201ENST00000250495 SLC39A6Q13433 755 aa28.36■■■□□ 2.13
NEDD8-201ENST00000250495 INTS5Q6P9B9 1019 aaKnown RBP28.36■■■□□ 2.13
NEDD8-201ENST00000250495 DNAJC10Q8IXB1 793 aa28.36■■■□□ 2.13
NEDD8-201ENST00000250495 CICQ96RK0 1608 aaPredicted RBP28.36■■■□□ 2.13
NEDD8-201ENST00000250495 KIF13BQ9NQT8 1826 aa28.34■■■□□ 2.13
NEDD8-201ENST00000250495 TJP1Q07157 1748 aa28.34■■■□□ 2.13
NEDD8-201ENST00000250495 MRC1P22897 1456 aa28.34■■■□□ 2.13
NEDD8-201ENST00000250495 SRP68Q9UHB9 627 aaKnown RBP28.33■■■□□ 2.13
NEDD8-201ENST00000250495 USP42Q9H9J4 1324 aaKnown RBP28.33■■■□□ 2.13
NEDD8-201ENST00000250495 VIRMAQ69YN4 1812 aaKnown RBP28.32■■■□□ 2.12
NEDD8-201ENST00000250495 A0A0G2JLW4 131 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 VSIG10Q8N0Z9 540 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 GAS2L2Q8NHY3 880 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 C10orf71Q711Q0 1435 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 ATP10DQ9P241 1426 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 PXDNLA1KZ92 1463 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 C4AP0C0L4 1744 aa28.32■■■□□ 2.12
NEDD8-201ENST00000250495 ZPR1O75312 459 aa28.31■■■□□ 2.12
NEDD8-201ENST00000250495 CYP19A1P11511 503 aaPredicted RBP28.31■■■□□ 2.12
NEDD8-201ENST00000250495 FKBP8Q14318 412 aa28.31■■■□□ 2.12
NEDD8-201ENST00000250495 CFAP53Q96M91 514 aa28.31■■■□□ 2.12
NEDD8-201ENST00000250495 COL3A1P02461 1466 aaPredicted RBP28.31■■■□□ 2.12
NEDD8-201ENST00000250495 SENP3-EIF4A1A0A087X0R7 540 aa28.29■■■□□ 2.12
NEDD8-201ENST00000250495 GNAT3A8MTJ3 354 aa28.29■■■□□ 2.12
NEDD8-201ENST00000250495 GPBP1L1Q9HC44 474 aaPredicted RBP28.29■■■□□ 2.12
NEDD8-201ENST00000250495 BCS1LQ9Y276 419 aa28.29■■■□□ 2.12
NEDD8-201ENST00000250495 ADAMTS7Q9UKP4 1686 aa28.29■■■□□ 2.12
NEDD8-201ENST00000250495 DPEP1P16444 411 aa28.28■■■□□ 2.12
NEDD8-201ENST00000250495 TTC5Q8N0Z6 440 aa28.28■■■□□ 2.12
NEDD8-201ENST00000250495 N4BP2Q86UW6 1770 aaPredicted RBP28.27■■■□□ 2.12
NEDD8-201ENST00000250495 SOS1Q07889 1333 aaPredicted RBP28.27■■■□□ 2.12
NEDD8-201ENST00000250495 TEFQ10587 303 aa28.27■■■□□ 2.12
NEDD8-201ENST00000250495 ADCY9O60503 1353 aa28.26■■■□□ 2.12
NEDD8-201ENST00000250495 KCPQ6ZWJ8 1503 aa28.25■■■□□ 2.11
NEDD8-201ENST00000250495 TM4SF1P30408 202 aa28.25■■■□□ 2.11
NEDD8-201ENST00000250495 USPL1Q5W0Q7 1092 aa28.25■■■□□ 2.11
NEDD8-201ENST00000250495 IL17REQ8NFR9 667 aa28.25■■■□□ 2.11
NEDD8-201ENST00000250495 NUDCQ9Y266 331 aa28.25■■■□□ 2.11
NEDD8-201ENST00000250495 KIAA1551Q9HCM1 1747 aa28.25■■■□□ 2.11
NEDD8-201ENST00000250495 FCHSD2O94868 740 aa28.24■■■□□ 2.11
NEDD8-201ENST00000250495 DDR1Q08345 913 aa28.24■■■□□ 2.11
NEDD8-201ENST00000250495 NARFQ9UHQ1 456 aa28.24■■■□□ 2.11
NEDD8-201ENST00000250495 STARD3NLO95772 234 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms