RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 CCT4P50991 539 aaKnown RBP21.89■■□□□ 1.1
VRK1-201ENST00000216639 EIF4A1P60842 406 aaKnown RBP21.89■■□□□ 1.09
VRK1-201ENST00000216639 HDGFL1Q5TGJ6 251 aa21.89■■□□□ 1.09
VRK1-201ENST00000216639 CACNA1FO60840 1977 aa21.88■■□□□ 1.09
VRK1-201ENST00000216639 FLIIQ13045 1269 aa21.87■■□□□ 1.09
VRK1-201ENST00000216639 G2E3Q7L622 706 aa21.87■■□□□ 1.09
VRK1-201ENST00000216639 C1orf115Q9H7X2 142 aa21.87■■□□□ 1.09
VRK1-201ENST00000216639 PRDM11Q9NQV5 511 aa21.87■■□□□ 1.09
VRK1-201ENST00000216639 NPM2Q86SE8 214 aaKnown RBP21.86■■□□□ 1.09
VRK1-201ENST00000216639 IPO9Q96P70 1041 aaKnown RBP21.86■■□□□ 1.09
VRK1-201ENST00000216639 NUCB1Q02818 461 aa21.85■■□□□ 1.09
VRK1-201ENST00000216639 FKBP5Q13451 457 aaPredicted RBP21.85■■□□□ 1.09
VRK1-201ENST00000216639 VIRMAQ69YN4 1812 aaKnown RBP21.85■■□□□ 1.09
VRK1-201ENST00000216639 ADAMTS7Q9UKP4 1686 aa21.85■■□□□ 1.09
VRK1-201ENST00000216639 NHSL1Q5SYE7 1610 aa21.85■■□□□ 1.09
VRK1-201ENST00000216639 SLC4A10Q6U841 1118 aa21.84■■□□□ 1.09
VRK1-201ENST00000216639 RPAP2Q8IXW5 612 aaPredicted RBP21.84■■□□□ 1.09
VRK1-201ENST00000216639 NECTIN2Q92692 538 aa21.84■■□□□ 1.09
VRK1-201ENST00000216639 IFNL2Q8IZJ0 200 aa21.83■■□□□ 1.09
VRK1-201ENST00000216639 MEGF6O75095 1541 aa21.83■■□□□ 1.08
VRK1-201ENST00000216639 MSH5O43196 834 aa21.82■■□□□ 1.08
VRK1-201ENST00000216639 PHKG2P15735 406 aa21.82■■□□□ 1.08
VRK1-201ENST00000216639 ERICH6Q7L0X2 663 aa21.82■■□□□ 1.08
VRK1-201ENST00000216639 CHD1LQ86WJ1 897 aa21.81■■□□□ 1.08
VRK1-201ENST00000216639 WDR17Q8IZU2 1322 aa21.81■■□□□ 1.08
VRK1-201ENST00000216639 PXDNLA1KZ92 1463 aa21.81■■□□□ 1.08
VRK1-201ENST00000216639 F6X3S4 739 aa21.8■■□□□ 1.08
VRK1-201ENST00000216639 HSP90AB1P08238 724 aaKnown RBP21.8■■□□□ 1.08
VRK1-201ENST00000216639 EIF2S2P20042 333 aaKnown RBP21.8■■□□□ 1.08
VRK1-201ENST00000216639 SIRT2Q8IXJ6 389 aa21.8■■□□□ 1.08
VRK1-201ENST00000216639 ANKRD44Q8N8A2 993 aa21.8■■□□□ 1.08
VRK1-201ENST00000216639 SIPA1L3O60292 1781 aaPredicted RBP21.8■■□□□ 1.08
VRK1-201ENST00000216639 KCNQ3O43525 872 aa21.8■■□□□ 1.08
VRK1-201ENST00000216639 ABCA3Q99758 1704 aa21.79■■□□□ 1.08
VRK1-201ENST00000216639 MEIS3Q99687 375 aa21.79■■□□□ 1.08
VRK1-201ENST00000216639 ANKRD45Q5TZF3 282 aa21.78■■□□□ 1.08
VRK1-201ENST00000216639 TOM1L2Q6ZVM7 507 aa21.78■■□□□ 1.08
VRK1-201ENST00000216639 DDRGK1Q96HY6 314 aa21.78■■□□□ 1.08
VRK1-201ENST00000216639 DCAF5Q96JK2 942 aa21.78■■□□□ 1.08
VRK1-201ENST00000216639 PKD1L3Q7Z443 1732 aa21.78■■□□□ 1.08
VRK1-201ENST00000216639 SCN11AQ9UI33 1791 aa21.78■■□□□ 1.08
VRK1-201ENST00000216639 GNAI3P08754 354 aa21.77■■□□□ 1.08
VRK1-201ENST00000216639 SLC52A2Q9HAB3 445 aa21.77■■□□□ 1.08
VRK1-201ENST00000216639 ATP10DQ9P241 1426 aa21.77■■□□□ 1.08
VRK1-201ENST00000216639 COL5A2P05997 1499 aaPredicted RBP21.77■■□□□ 1.08
VRK1-201ENST00000216639 CEP85Q6P2H3 762 aa21.77■■□□□ 1.08
VRK1-201ENST00000216639 LNPKQ9C0E8 428 aa21.77■■□□□ 1.08
VRK1-201ENST00000216639 HMMRO75330 724 aa21.76■■□□□ 1.07
VRK1-201ENST00000216639 DCTPP1Q9H773 170 aa21.76■■□□□ 1.07
VRK1-201ENST00000216639 DBF4Q9UBU7 674 aaPredicted RBP21.76■■□□□ 1.07
VRK1-201ENST00000216639 ZBTB47Q9UFB7 747 aaPredicted RBP21.76■■□□□ 1.07
VRK1-201ENST00000216639 KDM6AO15550 1401 aaPredicted RBP21.76■■□□□ 1.07
VRK1-201ENST00000216639 PARP4Q9UKK3 1724 aaKnown RBP21.75■■□□□ 1.07
VRK1-201ENST00000216639 HEG1Q9ULI3 1381 aa21.75■■□□□ 1.07
VRK1-201ENST00000216639 GIGYF1O75420 1035 aaPredicted RBP21.75■■□□□ 1.07
VRK1-201ENST00000216639 CHPF2Q9P2E5 772 aa21.75■■□□□ 1.07
VRK1-201ENST00000216639 NOP58Q9Y2X3 529 aaKnown RBP21.75■■□□□ 1.07
VRK1-201ENST00000216639 N4BP2Q86UW6 1770 aaPredicted RBP21.75■■□□□ 1.07
VRK1-201ENST00000216639 GNAI2P04899 355 aa21.75■■□□□ 1.07
VRK1-201ENST00000216639 PHAXQ9H814 394 aaKnown RBP21.74■■□□□ 1.07
VRK1-201ENST00000216639 EVA1CP58658 441 aa21.73■■□□□ 1.07
VRK1-201ENST00000216639 ZNF790Q6PG37 636 aa21.73■■□□□ 1.07
VRK1-201ENST00000216639 UPF2Q9HAU5 1272 aaKnown RBP21.73■■□□□ 1.07
VRK1-201ENST00000216639 CYP27B1O15528 508 aa21.72■■□□□ 1.07
VRK1-201ENST00000216639 CARD10Q9BWT7 1032 aa21.72■■□□□ 1.07
VRK1-201ENST00000216639 MRC1P22897 1456 aa21.72■■□□□ 1.07
VRK1-201ENST00000216639 PCDH11XQ9BZA7 1347 aa21.72■■□□□ 1.07
VRK1-201ENST00000216639 PCDH11YQ9BZA8 1340 aa21.72■■□□□ 1.07
VRK1-201ENST00000216639 NFATC2IPQ8NCF5 419 aa21.71■■□□□ 1.07
VRK1-201ENST00000216639 ZCRB1Q8TBF4 217 aaKnown RBP21.7■■□□□ 1.06
VRK1-201ENST00000216639 SRCIN1Q9C0H9 1055 aa21.7■■□□□ 1.06
VRK1-201ENST00000216639 IL2RBP14784 551 aa21.69■■□□□ 1.06
VRK1-201ENST00000216639 TTC5Q8N0Z6 440 aa21.69■■□□□ 1.06
VRK1-201ENST00000216639 HYPKQ9NX55 129 aa21.69■■□□□ 1.06
VRK1-201ENST00000216639 CABP4P57796 275 aa21.69■■□□□ 1.06
VRK1-201ENST00000216639 DNAAF4Q8WXU2 420 aa21.69■■□□□ 1.06
VRK1-201ENST00000216639 STRN4Q9NRL3 753 aa21.69■■□□□ 1.06
VRK1-201ENST00000216639 ROBO1Q9Y6N7 1651 aa21.68■■□□□ 1.06
VRK1-201ENST00000216639 AHDC1Q5TGY3 1603 aaPredicted RBP21.67■■□□□ 1.06
VRK1-201ENST00000216639 PI4KAP2A4QPH2 592 aa21.66■■□□□ 1.06
VRK1-201ENST00000216639 UBTFL1P0CB47 393 aaPredicted RBP21.66■■□□□ 1.06
VRK1-201ENST00000216639 SLC39A6Q13433 755 aa21.66■■□□□ 1.06
VRK1-201ENST00000216639 BMP2KLQ5H9B9 411 aa21.66■■□□□ 1.06
VRK1-201ENST00000216639 PI4KAP1Q8N8J0 262 aa21.66■■□□□ 1.06
VRK1-201ENST00000216639 DDX58O95786 925 aaKnown RBP21.66■■□□□ 1.06
VRK1-201ENST00000216639 DDX21Q9NR30 783 aaKnown RBP eCLIP21.66■■□□□ 1.06
VRK1-201ENST00000216639 LARP1Q6PKG0 1096 aaKnown RBP21.65■■□□□ 1.06
VRK1-201ENST00000216639 USP44Q9H0E7 712 aa21.65■■□□□ 1.06
VRK1-201ENST00000216639 SEC24BO95487 1268 aa21.64■■□□□ 1.06
VRK1-201ENST00000216639 ATP8B2P98198 1209 aa21.64■■□□□ 1.06
VRK1-201ENST00000216639 FMNL2Q96PY5 1086 aa21.64■■□□□ 1.06
VRK1-201ENST00000216639 LTBP4Q8N2S1 1624 aa21.64■■□□□ 1.05
VRK1-201ENST00000216639 ANXA1P04083 346 aa21.63■■□□□ 1.05
VRK1-201ENST00000216639 SNRPA1P09661 255 aaKnown RBP21.63■■□□□ 1.05
VRK1-201ENST00000216639 BEND3Q5T5X7 828 aa21.63■■□□□ 1.05
VRK1-201ENST00000216639 KSR2Q6VAB6 950 aa21.63■■□□□ 1.05
VRK1-201ENST00000216639 PRAMEF22A3QJZ6 481 aa21.63■■□□□ 1.05
VRK1-201ENST00000216639 ERVV-2B6SEH9 535 aa21.63■■□□□ 1.05
VRK1-201ENST00000216639 ANP32EQ9BTT0 268 aa21.63■■□□□ 1.05
VRK1-201ENST00000216639 DAXXQ9UER7 740 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms