RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ATP6V1AP38606 617 aa30.17■■■□□ 2.42
VTI1B-201ENST00000216456 MTHFSP49914 203 aa30.17■■■□□ 2.42
VTI1B-201ENST00000216456 PELP1Q8IZL8 1130 aaKnown RBP30.16■■■□□ 2.42
VTI1B-201ENST00000216456 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.15■■■□□ 2.42
VTI1B-201ENST00000216456 UBR3Q6ZT12 1888 aa30.14■■■□□ 2.42
VTI1B-201ENST00000216456 GPR162Q16538 588 aa30.14■■■□□ 2.42
VTI1B-201ENST00000216456 DCAF5Q96JK2 942 aa30.14■■■□□ 2.42
VTI1B-201ENST00000216456 ERVV-2B6SEH9 535 aa30.12■■■□□ 2.41
VTI1B-201ENST00000216456 AMOTQ4VCS5 1084 aa30.12■■■□□ 2.41
VTI1B-201ENST00000216456 RBM42Q9BTD8 480 aaKnown RBP30.12■■■□□ 2.41
VTI1B-201ENST00000216456 KDRP35968 1356 aa30.12■■■□□ 2.41
VTI1B-201ENST00000216456 PLEKHG2Q9H7P9 1386 aa30.12■■■□□ 2.41
VTI1B-201ENST00000216456 GNPATO15228 680 aa30.11■■■□□ 2.41
VTI1B-201ENST00000216456 HMOX1P09601 288 aa30.11■■■□□ 2.41
VTI1B-201ENST00000216456 FLAD1Q8NFF5 587 aa30.11■■■□□ 2.41
VTI1B-201ENST00000216456 CABP4P57796 275 aa30.1■■■□□ 2.41
VTI1B-201ENST00000216456 HSP90AB1P08238 724 aaKnown RBP30.09■■■□□ 2.41
VTI1B-201ENST00000216456 C1orf141Q5JVX7 400 aa30.08■■■□□ 2.41
VTI1B-201ENST00000216456 YBX3P16989 372 aaKnown RBP eCLIP30.06■■■□□ 2.41e-6■■□□□ 14.4
VTI1B-201ENST00000216456 SSFA2P28290 1259 aa30.06■■■□□ 2.4
VTI1B-201ENST00000216456 NFATC2IPQ8NCF5 419 aa30.06■■■□□ 2.4
VTI1B-201ENST00000216456 PTCD1O75127 700 aaKnown RBP30.04■■■□□ 2.4
VTI1B-201ENST00000216456 ZNF784Q8NCA9 323 aaPredicted RBP30.04■■■□□ 2.4
VTI1B-201ENST00000216456 LGR6Q9HBX8 967 aa30.03■■■□□ 2.4
VTI1B-201ENST00000216456 WWC3Q9ULE0 1092 aa30.03■■■□□ 2.4
VTI1B-201ENST00000216456 HMGB2P26583 209 aaKnown RBP30.01■■■□□ 2.39
VTI1B-201ENST00000216456 DIAPH1O60610 1272 aaKnown RBP30■■■□□ 2.39
VTI1B-201ENST00000216456 COL3A1P02461 1466 aaPredicted RBP29.99■■■□□ 2.39
VTI1B-201ENST00000216456 MTHFSDQ2M296 383 aaKnown RBP29.98■■■□□ 2.39
VTI1B-201ENST00000216456 CHD4Q14839 1912 aa29.97■■■□□ 2.39
VTI1B-201ENST00000216456 AKAP4Q5JQC9 854 aa29.97■■■□□ 2.39
VTI1B-201ENST00000216456 RTCBQ9Y3I0 505 aaKnown RBP29.97■■■□□ 2.39
VTI1B-201ENST00000216456 CD2APQ9Y5K6 639 aa29.97■■■□□ 2.39
VTI1B-201ENST00000216456 COL5A3P25940 1745 aaPredicted RBP29.96■■■□□ 2.39
VTI1B-201ENST00000216456 ARHGEF1Q92888 912 aaKnown RBP29.96■■■□□ 2.39
VTI1B-201ENST00000216456 SCN11AQ9UI33 1791 aa29.95■■■□□ 2.39
VTI1B-201ENST00000216456 NPC1L1Q9UHC9 1359 aa29.94■■■□□ 2.38
VTI1B-201ENST00000216456 MYH14Q7Z406 1995 aaKnown RBP29.94■■■□□ 2.38
VTI1B-201ENST00000216456 RNMTO43148 476 aaKnown RBP29.94■■■□□ 2.38
VTI1B-201ENST00000216456 SLC39A6Q13433 755 aa29.94■■■□□ 2.38
VTI1B-201ENST00000216456 TRAPPC3LQ5T215 181 aa29.94■■■□□ 2.38
VTI1B-201ENST00000216456 CNTNAP4Q9C0A0 1308 aa29.94■■■□□ 2.38
VTI1B-201ENST00000216456 ZNF831Q5JPB2 1677 aa29.93■■■□□ 2.38
VTI1B-201ENST00000216456 MMP10P09238 476 aa29.93■■■□□ 2.38
VTI1B-201ENST00000216456 SLC52A2Q9HAB3 445 aa29.93■■■□□ 2.38
VTI1B-201ENST00000216456 U2SURPO15042 1029 aaKnown RBP29.92■■■□□ 2.38
VTI1B-201ENST00000216456 RC3H1Q5TC82 1133 aaKnown RBP29.92■■■□□ 2.38
VTI1B-201ENST00000216456 RPS6KA4O75676 772 aa29.91■■■□□ 2.38
VTI1B-201ENST00000216456 CRKLP46109 303 aaKnown RBP29.91■■■□□ 2.38
VTI1B-201ENST00000216456 TJP1Q07157 1748 aa29.91■■■□□ 2.38
VTI1B-201ENST00000216456 DNAJC10Q8IXB1 793 aa29.89■■■□□ 2.38
VTI1B-201ENST00000216456 GYS1P13807 737 aa29.88■■■□□ 2.37
VTI1B-201ENST00000216456 SRP68Q9UHB9 627 aaKnown RBP29.88■■■□□ 2.37
VTI1B-201ENST00000216456 MRC1P22897 1456 aa29.87■■■□□ 2.37
VTI1B-201ENST00000216456 INTS5Q6P9B9 1019 aaKnown RBP29.86■■■□□ 2.37
VTI1B-201ENST00000216456 RFC4P35249 363 aa29.85■■■□□ 2.37
VTI1B-201ENST00000216456 CICQ96RK0 1608 aaPredicted RBP29.85■■■□□ 2.37
VTI1B-201ENST00000216456 C4AP0C0L4 1744 aa29.85■■■□□ 2.37
VTI1B-201ENST00000216456 GRIN3BO60391 1043 aa29.84■■■□□ 2.37
VTI1B-201ENST00000216456 VIRMAQ69YN4 1812 aaKnown RBP29.83■■■□□ 2.37
VTI1B-201ENST00000216456 ADRA2BP18089 450 aa29.83■■■□□ 2.37
VTI1B-201ENST00000216456 KCPQ6ZWJ8 1503 aa29.82■■■□□ 2.36
VTI1B-201ENST00000216456 NLGN1Q8N2Q7 840 aa29.82■■■□□ 2.36
VTI1B-201ENST00000216456 ADAMTS7Q9UKP4 1686 aa29.82■■■□□ 2.36
VTI1B-201ENST00000216456 FKBP8Q14318 412 aa29.8■■■□□ 2.36
VTI1B-201ENST00000216456 IL17REQ8NFR9 667 aa29.8■■■□□ 2.36
VTI1B-201ENST00000216456 PHACTR3Q96KR7 559 aa29.8■■■□□ 2.36
VTI1B-201ENST00000216456 PPP2R1AP30153 589 aa29.79■■■□□ 2.36
VTI1B-201ENST00000216456 PXDNLA1KZ92 1463 aa29.79■■■□□ 2.36
VTI1B-201ENST00000216456 CYP19A1P11511 503 aaPredicted RBP29.78■■■□□ 2.36
VTI1B-201ENST00000216456 USP42Q9H9J4 1324 aaKnown RBP29.77■■■□□ 2.36
VTI1B-201ENST00000216456 A0A0G2JLW4 131 aa29.77■■■□□ 2.36
VTI1B-201ENST00000216456 CCDC87Q9NVE4 849 aa29.77■■■□□ 2.36
VTI1B-201ENST00000216456 KIAA1551Q9HCM1 1747 aa29.76■■■□□ 2.36
VTI1B-201ENST00000216456 PRKAR2BP31323 418 aa29.76■■■□□ 2.35
VTI1B-201ENST00000216456 RSPH6AQ9H0K4 717 aa29.76■■■□□ 2.35
VTI1B-201ENST00000216456 C10orf71Q711Q0 1435 aa29.76■■■□□ 2.35
VTI1B-201ENST00000216456 DDR1Q08345 913 aa29.75■■■□□ 2.35
VTI1B-201ENST00000216456 ZBTB1Q9Y2K1 713 aa29.75■■■□□ 2.35
VTI1B-201ENST00000216456 N4BP2Q86UW6 1770 aaPredicted RBP29.75■■■□□ 2.35
VTI1B-201ENST00000216456 PARP3Q9Y6F1 533 aa29.74■■■□□ 2.35
VTI1B-201ENST00000216456 SOS1Q07889 1333 aaPredicted RBP29.73■■■□□ 2.35
VTI1B-201ENST00000216456 GNAT3A8MTJ3 354 aa29.73■■■□□ 2.35
VTI1B-201ENST00000216456 DPEP1P16444 411 aa29.72■■■□□ 2.35
VTI1B-201ENST00000216456 USPL1Q5W0Q7 1092 aa29.72■■■□□ 2.35
VTI1B-201ENST00000216456 GAS2L2Q8NHY3 880 aa29.72■■■□□ 2.35
VTI1B-201ENST00000216456 CFAP53Q96M91 514 aa29.72■■■□□ 2.35
VTI1B-201ENST00000216456 KIF13BQ9NQT8 1826 aa29.72■■■□□ 2.35
VTI1B-201ENST00000216456 ZNF496Q96IT1 587 aaPredicted RBP29.7■■■□□ 2.35
VTI1B-201ENST00000216456 ATP10DQ9P241 1426 aa29.7■■■□□ 2.34
VTI1B-201ENST00000216456 KCNQ3O43525 872 aa29.69■■■□□ 2.34
VTI1B-201ENST00000216456 U2AF1L5P0DN76 240 aaPredicted RBP29.69■■■□□ 2.34
VTI1B-201ENST00000216456 U2AF1Q01081 240 aaKnown RBP eCLIP29.69■■■□□ 2.34
VTI1B-201ENST00000216456 UBR2Q8IWV8 1755 aa29.69■■■□□ 2.34
VTI1B-201ENST00000216456 CANXP27824 592 aaKnown RBP29.68■■■□□ 2.34
VTI1B-201ENST00000216456 TEFQ10587 303 aa29.68■■■□□ 2.34
VTI1B-201ENST00000216456 BCS1LQ9Y276 419 aa29.68■■■□□ 2.34
VTI1B-201ENST00000216456 C1QTNF8P60827 252 aa29.67■■■□□ 2.34
VTI1B-201ENST00000216456 TGFB2P61812 414 aa29.67■■■□□ 2.34
VTI1B-201ENST00000216456 TTC5Q8N0Z6 440 aa29.67■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms