Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm25239-201ENSMUST00000174915 86 ntBASIC46.99■■■■■ 5.11
Scn11aQ9R053 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC43.59■■■■■ 4.57
Scn11aQ9R053 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC42.59■■■■■ 4.41
Scn11aQ9R053 Gm15042-201ENSMUST00000120212 883 ntBASIC41.17■■■■■ 4.18
Scn11aQ9R053 Gm24109-201ENSMUST00000175489 103 ntBASIC40.91■■■■■ 4.14
Scn11aQ9R053 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
Scn11aQ9R053 Gm15045-201ENSMUST00000117359 883 ntBASIC40.53■■■■■ 4.08
Scn11aQ9R053 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
Scn11aQ9R053 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC39.72■■■■□ 3.95
Scn11aQ9R053 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.67■■■■□ 3.94
Scn11aQ9R053 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
Scn11aQ9R053 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC39.23■■■■□ 3.87
Scn11aQ9R053 Gm23366-201ENSMUST00000175022 89 ntBASIC39.16■■■■□ 3.86
Scn11aQ9R053 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.14■■■■□ 3.86
Scn11aQ9R053 AC153911.1-202ENSMUST00000218534 1034 ntBASIC38.39■■■■□ 3.74
Scn11aQ9R053 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC38.37■■■■□ 3.73
Scn11aQ9R053 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
Scn11aQ9R053 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC38.16■■■■□ 3.7
Scn11aQ9R053 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC37.98■■■■□ 3.67
Scn11aQ9R053 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
Scn11aQ9R053 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC37.96■■■■□ 3.67
Scn11aQ9R053 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37.94■■■■□ 3.66
Scn11aQ9R053 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC37.83■■■■□ 3.65
Scn11aQ9R053 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
Scn11aQ9R053 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC37.69■■■■□ 3.62
Scn11aQ9R053 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC37.62■■■■□ 3.61
Scn11aQ9R053 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC37.56■■■■□ 3.6
Scn11aQ9R053 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
Scn11aQ9R053 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC37.46■■■■□ 3.59
Scn11aQ9R053 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
Scn11aQ9R053 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.32■■■■□ 3.56
Scn11aQ9R053 Psd-208ENSMUST00000224556 2034 ntBASIC37.31■■■■□ 3.56
Scn11aQ9R053 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.56
Scn11aQ9R053 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC37.22■■■■□ 3.55
Scn11aQ9R053 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC37.13■■■■□ 3.54
Scn11aQ9R053 Gm25238-201ENSMUST00000174914 89 ntBASIC37.05■■■■□ 3.52
Scn11aQ9R053 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC37.02■■■■□ 3.52
Scn11aQ9R053 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC36.68■■■■□ 3.46
Scn11aQ9R053 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC36.4■■■■□ 3.42
Scn11aQ9R053 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC36.27■■■■□ 3.4
Scn11aQ9R053 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC36.21■■■■□ 3.39
Scn11aQ9R053 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Scn11aQ9R053 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC36.2■■■■□ 3.38
Scn11aQ9R053 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
Scn11aQ9R053 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
Scn11aQ9R053 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
Scn11aQ9R053 Gm27325-201ENSMUST00000175467 74 ntBASIC36.05■■■■□ 3.36
Scn11aQ9R053 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC36.03■■■■□ 3.36
Scn11aQ9R053 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.97■■■■□ 3.35
Scn11aQ9R053 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.96■■■■□ 3.35
Scn11aQ9R053 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
Scn11aQ9R053 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35.87■■■■□ 3.33
Scn11aQ9R053 Gm25262-201ENSMUST00000174934 133 ntBASIC35.71■■■■□ 3.31
Scn11aQ9R053 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC35.69■■■■□ 3.3
Scn11aQ9R053 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC35.64■■■■□ 3.3
Scn11aQ9R053 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
Scn11aQ9R053 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC35.59■■■■□ 3.29
Scn11aQ9R053 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC35.56■■■■□ 3.28
Scn11aQ9R053 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
Scn11aQ9R053 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
Scn11aQ9R053 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Scn11aQ9R053 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC35.41■■■■□ 3.26
Scn11aQ9R053 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC35.39■■■■□ 3.26
Scn11aQ9R053 Rab21-202ENSMUST00000218831 843 ntBASIC35.32■■■■□ 3.24
Scn11aQ9R053 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
Scn11aQ9R053 Gm26115-201ENSMUST00000175605 87 ntBASIC35.3■■■■□ 3.24
Scn11aQ9R053 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC35.23■■■■□ 3.23
Scn11aQ9R053 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
Scn11aQ9R053 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Scn11aQ9R053 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC35.16■■■■□ 3.22
Scn11aQ9R053 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC35.16■■■■□ 3.22
Scn11aQ9R053 Gm8109-201ENSMUST00000194076 746 ntBASIC35.15■■■■□ 3.22
Scn11aQ9R053 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC35.15■■■■□ 3.22
Scn11aQ9R053 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC35.13■■■■□ 3.21
Scn11aQ9R053 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC35.03■■■■□ 3.2
Scn11aQ9R053 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
Scn11aQ9R053 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
Scn11aQ9R053 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34.95■■■■□ 3.18
Scn11aQ9R053 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Scn11aQ9R053 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Scn11aQ9R053 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
Scn11aQ9R053 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
Scn11aQ9R053 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC34.85■■■■□ 3.17
Scn11aQ9R053 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.83■■■■□ 3.17
Scn11aQ9R053 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.82■■■■□ 3.17
Scn11aQ9R053 Gm10524-201ENSMUST00000181931 1893 ntBASIC34.8■■■■□ 3.16
Scn11aQ9R053 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
Scn11aQ9R053 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Scn11aQ9R053 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Scn11aQ9R053 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC34.74■■■■□ 3.15
Scn11aQ9R053 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
Scn11aQ9R053 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC34.7■■■■□ 3.15
Scn11aQ9R053 Gm42596-201ENSMUST00000196305 1958 ntBASIC34.67■■■■□ 3.14
Scn11aQ9R053 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC34.6■■■■□ 3.13
Scn11aQ9R053 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.12
Scn11aQ9R053 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
Scn11aQ9R053 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC34.49■■■■□ 3.11
Scn11aQ9R053 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC34.48■■■■□ 3.11
Scn11aQ9R053 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.45■■■■□ 3.11
Scn11aQ9R053 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC34.42■■■■□ 3.1
Retrieved 100 of 76,532 protein–RNA pairs in 9.6 ms