Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Gm25239-201ENSMUST00000174915 86 ntBASIC39.39■■■■□ 3.9
Sh3rf2Q8BZT2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.42■■■■□ 3.42
Sh3rf2Q8BZT2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
Sh3rf2Q8BZT2 Gm15042-201ENSMUST00000120212 883 ntBASIC34.45■■■■□ 3.11
Sh3rf2Q8BZT2 Gm24109-201ENSMUST00000175489 103 ntBASIC34.11■■■■□ 3.05
Sh3rf2Q8BZT2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Sh3rf2Q8BZT2 Gm15045-201ENSMUST00000117359 883 ntBASIC33.68■■■□□ 2.98
Sh3rf2Q8BZT2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Sh3rf2Q8BZT2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Sh3rf2Q8BZT2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.24■■■□□ 2.91
Sh3rf2Q8BZT2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
Sh3rf2Q8BZT2 Gm23366-201ENSMUST00000175022 89 ntBASIC32.91■■■□□ 2.86
Sh3rf2Q8BZT2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.8■■■□□ 2.84
Sh3rf2Q8BZT2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Sh3rf2Q8BZT2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Sh3rf2Q8BZT2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Sh3rf2Q8BZT2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.89■■■□□ 2.69
Sh3rf2Q8BZT2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Sh3rf2Q8BZT2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.81■■■□□ 2.68
Sh3rf2Q8BZT2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Sh3rf2Q8BZT2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Sh3rf2Q8BZT2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.61■■■□□ 2.65
Sh3rf2Q8BZT2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.47■■■□□ 2.63
Sh3rf2Q8BZT2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Sh3rf2Q8BZT2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
Sh3rf2Q8BZT2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Sh3rf2Q8BZT2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Sh3rf2Q8BZT2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Sh3rf2Q8BZT2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Sh3rf2Q8BZT2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Sh3rf2Q8BZT2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.21■■■□□ 2.59
Sh3rf2Q8BZT2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Sh3rf2Q8BZT2 Psd-208ENSMUST00000224556 2034 ntBASIC31.14■■■□□ 2.58
Sh3rf2Q8BZT2 Gm25238-201ENSMUST00000174914 89 ntBASIC31.08■■■□□ 2.57
Sh3rf2Q8BZT2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.06■■■□□ 2.56
Sh3rf2Q8BZT2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Sh3rf2Q8BZT2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Sh3rf2Q8BZT2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.65■■■□□ 2.5
Sh3rf2Q8BZT2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
Sh3rf2Q8BZT2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Sh3rf2Q8BZT2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Sh3rf2Q8BZT2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Sh3rf2Q8BZT2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.35■■■□□ 2.45
Sh3rf2Q8BZT2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Sh3rf2Q8BZT2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Sh3rf2Q8BZT2 Gm27325-201ENSMUST00000175467 74 ntBASIC30.19■■■□□ 2.42
Sh3rf2Q8BZT2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Sh3rf2Q8BZT2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.11■■■□□ 2.41
Sh3rf2Q8BZT2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.08■■■□□ 2.41
Sh3rf2Q8BZT2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
Sh3rf2Q8BZT2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC29.98■■■□□ 2.39
Sh3rf2Q8BZT2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Sh3rf2Q8BZT2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
Sh3rf2Q8BZT2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.86■■■□□ 2.37
Sh3rf2Q8BZT2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Sh3rf2Q8BZT2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.78■■■□□ 2.36
Sh3rf2Q8BZT2 Gm25262-201ENSMUST00000174934 133 ntBASIC29.77■■■□□ 2.36
Sh3rf2Q8BZT2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Sh3rf2Q8BZT2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Sh3rf2Q8BZT2 Rab21-202ENSMUST00000218831 843 ntBASIC29.63■■■□□ 2.33
Sh3rf2Q8BZT2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
Sh3rf2Q8BZT2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.54■■■□□ 2.32
Sh3rf2Q8BZT2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.51■■■□□ 2.31
Sh3rf2Q8BZT2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Sh3rf2Q8BZT2 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Sh3rf2Q8BZT2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Sh3rf2Q8BZT2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Sh3rf2Q8BZT2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Sh3rf2Q8BZT2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
Sh3rf2Q8BZT2 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
Sh3rf2Q8BZT2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.32■■■□□ 2.28
Sh3rf2Q8BZT2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Sh3rf2Q8BZT2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
Sh3rf2Q8BZT2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.27■■■□□ 2.28
Sh3rf2Q8BZT2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
Sh3rf2Q8BZT2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Sh3rf2Q8BZT2 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.23■■■□□ 2.27
Sh3rf2Q8BZT2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.22■■■□□ 2.27
Sh3rf2Q8BZT2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
Sh3rf2Q8BZT2 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Sh3rf2Q8BZT2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.19■■■□□ 2.26
Sh3rf2Q8BZT2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Sh3rf2Q8BZT2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.18■■■□□ 2.26
Sh3rf2Q8BZT2 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
Sh3rf2Q8BZT2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
Sh3rf2Q8BZT2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.25
Sh3rf2Q8BZT2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Sh3rf2Q8BZT2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Sh3rf2Q8BZT2 Gm26115-201ENSMUST00000175605 87 ntBASIC29.01■■■□□ 2.23
Sh3rf2Q8BZT2 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.97■■■□□ 2.23
Sh3rf2Q8BZT2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.97■■■□□ 2.23
Sh3rf2Q8BZT2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
Sh3rf2Q8BZT2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Sh3rf2Q8BZT2 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.92■■■□□ 2.22
Sh3rf2Q8BZT2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.9■■■□□ 2.22
Sh3rf2Q8BZT2 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Sh3rf2Q8BZT2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Sh3rf2Q8BZT2 Gm8109-201ENSMUST00000194076 746 ntBASIC28.86■■■□□ 2.21
Sh3rf2Q8BZT2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.84■■■□□ 2.21
Sh3rf2Q8BZT2 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Retrieved 100 of 76,532 protein–RNA pairs in 83.6 ms