Protein–RNA interactions for Protein: Q66PY1

Scube3, Signal peptide, CUB and EGF-like domain-containing protein 3, mousemouse

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scube3Q66PY1 Gm25239-201ENSMUST00000174915 86 ntBASIC39.62■■■■□ 3.93
Scube3Q66PY1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
Scube3Q66PY1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
Scube3Q66PY1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
Scube3Q66PY1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Scube3Q66PY1 Gm15042-201ENSMUST00000120212 883 ntBASIC34.88■■■■□ 3.17
Scube3Q66PY1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.52■■■■□ 3.12
Scube3Q66PY1 Gm24109-201ENSMUST00000175489 103 ntBASIC34.19■■■■□ 3.06
Scube3Q66PY1 Gm15045-201ENSMUST00000117359 883 ntBASIC34.18■■■■□ 3.06
Scube3Q66PY1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
Scube3Q66PY1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Scube3Q66PY1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.41■■■□□ 2.94
Scube3Q66PY1 Gm23366-201ENSMUST00000175022 89 ntBASIC33.1■■■□□ 2.89
Scube3Q66PY1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
Scube3Q66PY1 Psd-208ENSMUST00000224556 2034 ntBASIC33.05■■■□□ 2.88
Scube3Q66PY1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.02■■■□□ 2.88
Scube3Q66PY1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Scube3Q66PY1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
Scube3Q66PY1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Scube3Q66PY1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
Scube3Q66PY1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Scube3Q66PY1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Scube3Q66PY1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.43■■■□□ 2.78
Scube3Q66PY1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.35■■■□□ 2.77
Scube3Q66PY1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Scube3Q66PY1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
Scube3Q66PY1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.21■■■□□ 2.75
Scube3Q66PY1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
Scube3Q66PY1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.08■■■□□ 2.73
Scube3Q66PY1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Scube3Q66PY1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Scube3Q66PY1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.76■■■□□ 2.67
Scube3Q66PY1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Scube3Q66PY1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.65■■■□□ 2.66
Scube3Q66PY1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Scube3Q66PY1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.35■■■□□ 2.61
Scube3Q66PY1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Scube3Q66PY1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Scube3Q66PY1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Scube3Q66PY1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Scube3Q66PY1 Gm25238-201ENSMUST00000174914 89 ntBASIC31.2■■■□□ 2.59
Scube3Q66PY1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Scube3Q66PY1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Scube3Q66PY1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Scube3Q66PY1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.15■■■□□ 2.58
Scube3Q66PY1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.1■■■□□ 2.57
Scube3Q66PY1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Scube3Q66PY1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Scube3Q66PY1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.94■■■□□ 2.54
Scube3Q66PY1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scube3Q66PY1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scube3Q66PY1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Scube3Q66PY1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
Scube3Q66PY1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Scube3Q66PY1 Gm27325-201ENSMUST00000175467 74 ntBASIC30.65■■■□□ 2.5
Scube3Q66PY1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Scube3Q66PY1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.61■■■□□ 2.49
Scube3Q66PY1 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.61■■■□□ 2.49
Scube3Q66PY1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
Scube3Q66PY1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Scube3Q66PY1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Scube3Q66PY1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.44■■■□□ 2.46
Scube3Q66PY1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Scube3Q66PY1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.38■■■□□ 2.45
Scube3Q66PY1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Scube3Q66PY1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.26■■■□□ 2.44
Scube3Q66PY1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.24■■■□□ 2.43
Scube3Q66PY1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Scube3Q66PY1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Scube3Q66PY1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Scube3Q66PY1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.21■■■□□ 2.43
Scube3Q66PY1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scube3Q66PY1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Scube3Q66PY1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.17■■■□□ 2.42
Scube3Q66PY1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Scube3Q66PY1 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.09■■■□□ 2.41
Scube3Q66PY1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
Scube3Q66PY1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
Scube3Q66PY1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
Scube3Q66PY1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.9■■■□□ 2.38
Scube3Q66PY1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
Scube3Q66PY1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Scube3Q66PY1 Rab21-202ENSMUST00000218831 843 ntBASIC29.88■■■□□ 2.37
Scube3Q66PY1 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Scube3Q66PY1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Scube3Q66PY1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.74■■■□□ 2.35
Scube3Q66PY1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Scube3Q66PY1 Gm25262-201ENSMUST00000174934 133 ntBASIC29.7■■■□□ 2.35
Scube3Q66PY1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
Scube3Q66PY1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
Scube3Q66PY1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.55■■■□□ 2.32
Scube3Q66PY1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
Scube3Q66PY1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Scube3Q66PY1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
Scube3Q66PY1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.49■■■□□ 2.31
Scube3Q66PY1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
Scube3Q66PY1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Scube3Q66PY1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.44■■■□□ 2.3
Scube3Q66PY1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Scube3Q66PY1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms