Protein–RNA interactions for Protein: Q60857

Slc6a4, Sodium-dependent serotonin transporter, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a4Q60857 Gm25239-201ENSMUST00000174915 86 ntBASIC39.46■■■■□ 3.91
Slc6a4Q60857 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.42■■■■□ 3.42
Slc6a4Q60857 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Slc6a4Q60857 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Slc6a4Q60857 Gm15042-201ENSMUST00000120212 883 ntBASIC34.6■■■■□ 3.13
Slc6a4Q60857 Gm24109-201ENSMUST00000175489 103 ntBASIC34.15■■■■□ 3.06
Slc6a4Q60857 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
Slc6a4Q60857 Gm15045-201ENSMUST00000117359 883 ntBASIC33.89■■■■□ 3.02
Slc6a4Q60857 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.54■■■□□ 2.96
Slc6a4Q60857 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Slc6a4Q60857 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.29■■■□□ 2.92
Slc6a4Q60857 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Slc6a4Q60857 Gm23366-201ENSMUST00000175022 89 ntBASIC32.93■■■□□ 2.86
Slc6a4Q60857 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Slc6a4Q60857 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Slc6a4Q60857 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.37■■■□□ 2.77
Slc6a4Q60857 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Slc6a4Q60857 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
Slc6a4Q60857 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Slc6a4Q60857 Psd-208ENSMUST00000224556 2034 ntBASIC32.01■■■□□ 2.71
Slc6a4Q60857 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Slc6a4Q60857 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
Slc6a4Q60857 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Slc6a4Q60857 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
Slc6a4Q60857 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.82■■■□□ 2.68
Slc6a4Q60857 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.77■■■□□ 2.68
Slc6a4Q60857 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Slc6a4Q60857 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.64■■■□□ 2.66
Slc6a4Q60857 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.63■■■□□ 2.65
Slc6a4Q60857 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.64
Slc6a4Q60857 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.38■■■□□ 2.61
Slc6a4Q60857 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Slc6a4Q60857 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Slc6a4Q60857 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Slc6a4Q60857 Gm25238-201ENSMUST00000174914 89 ntBASIC31.12■■■□□ 2.57
Slc6a4Q60857 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.1■■■□□ 2.57
Slc6a4Q60857 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Slc6a4Q60857 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.01■■■□□ 2.55
Slc6a4Q60857 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Slc6a4Q60857 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Slc6a4Q60857 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Slc6a4Q60857 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Slc6a4Q60857 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Slc6a4Q60857 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Slc6a4Q60857 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.49■■■□□ 2.47
Slc6a4Q60857 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Slc6a4Q60857 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.46■■■□□ 2.47
Slc6a4Q60857 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.41■■■□□ 2.46
Slc6a4Q60857 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Slc6a4Q60857 Gm27325-201ENSMUST00000175467 74 ntBASIC30.35■■■□□ 2.45
Slc6a4Q60857 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.34■■■□□ 2.45
Slc6a4Q60857 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Slc6a4Q60857 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Slc6a4Q60857 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Slc6a4Q60857 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.11■■■□□ 2.41
Slc6a4Q60857 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.07■■■□□ 2.41
Slc6a4Q60857 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.02■■■□□ 2.4
Slc6a4Q60857 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.01■■■□□ 2.39
Slc6a4Q60857 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC29.99■■■□□ 2.39
Slc6a4Q60857 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
Slc6a4Q60857 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Slc6a4Q60857 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.86■■■□□ 2.37
Slc6a4Q60857 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Slc6a4Q60857 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
Slc6a4Q60857 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.79■■■□□ 2.36
Slc6a4Q60857 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Slc6a4Q60857 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Slc6a4Q60857 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
Slc6a4Q60857 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Slc6a4Q60857 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Slc6a4Q60857 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Slc6a4Q60857 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Slc6a4Q60857 Rab21-202ENSMUST00000218831 843 ntBASIC29.69■■■□□ 2.34
Slc6a4Q60857 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
Slc6a4Q60857 Gm25262-201ENSMUST00000174934 133 ntBASIC29.68■■■□□ 2.34
Slc6a4Q60857 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
Slc6a4Q60857 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.58■■■□□ 2.33
Slc6a4Q60857 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.54■■■□□ 2.32
Slc6a4Q60857 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Slc6a4Q60857 CT025624.2-201ENSMUST00000223609 1909 ntBASIC29.46■■■□□ 2.31
Slc6a4Q60857 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.43■■■□□ 2.3
Slc6a4Q60857 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Slc6a4Q60857 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Slc6a4Q60857 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
Slc6a4Q60857 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.37■■■□□ 2.29
Slc6a4Q60857 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Slc6a4Q60857 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
Slc6a4Q60857 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
Slc6a4Q60857 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.21■■■□□ 2.27
Slc6a4Q60857 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Slc6a4Q60857 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.18■■■□□ 2.26
Slc6a4Q60857 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.15■■■□□ 2.26
Slc6a4Q60857 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Slc6a4Q60857 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Slc6a4Q60857 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
Slc6a4Q60857 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.07■■■□□ 2.24
Slc6a4Q60857 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.23
Slc6a4Q60857 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Slc6a4Q60857 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.94■■■□□ 2.22
Slc6a4Q60857 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.92■■■□□ 2.22
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms