Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm25239-201ENSMUST00000174915 86 ntBASIC40.24■■■■■ 4.03
Shmt1P50431 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.1■■■■□ 3.53
Shmt1P50431 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
Shmt1P50431 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.05■■■■□ 3.36
Shmt1P50431 Gm15042-201ENSMUST00000120212 883 ntBASIC35.38■■■■□ 3.25
Shmt1P50431 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
Shmt1P50431 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
Shmt1P50431 Gm24109-201ENSMUST00000175489 103 ntBASIC34.8■■■■□ 3.16
Shmt1P50431 Gm15045-201ENSMUST00000117359 883 ntBASIC34.7■■■■□ 3.15
Shmt1P50431 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
Shmt1P50431 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.95■■■■□ 3.03
Shmt1P50431 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
Shmt1P50431 Gm23366-201ENSMUST00000175022 89 ntBASIC33.58■■■□□ 2.97
Shmt1P50431 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
Shmt1P50431 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
Shmt1P50431 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.39■■■□□ 2.94
Shmt1P50431 Psd-208ENSMUST00000224556 2034 ntBASIC33.34■■■□□ 2.93
Shmt1P50431 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
Shmt1P50431 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
Shmt1P50431 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Shmt1P50431 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Shmt1P50431 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Shmt1P50431 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.84■■■□□ 2.85
Shmt1P50431 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.74■■■□□ 2.83
Shmt1P50431 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Shmt1P50431 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.6■■■□□ 2.81
Shmt1P50431 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.59■■■□□ 2.81
Shmt1P50431 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
Shmt1P50431 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.49■■■□□ 2.79
Shmt1P50431 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.22■■■□□ 2.75
Shmt1P50431 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Shmt1P50431 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Shmt1P50431 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.07■■■□□ 2.73
Shmt1P50431 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Shmt1P50431 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
Shmt1P50431 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.92■■■□□ 2.7
Shmt1P50431 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Shmt1P50431 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Shmt1P50431 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Shmt1P50431 Gm25238-201ENSMUST00000174914 89 ntBASIC31.73■■■□□ 2.67
Shmt1P50431 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Shmt1P50431 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.56■■■□□ 2.64
Shmt1P50431 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Shmt1P50431 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Shmt1P50431 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Shmt1P50431 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.43■■■□□ 2.62
Shmt1P50431 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Shmt1P50431 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Shmt1P50431 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.3■■■□□ 2.6
Shmt1P50431 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Shmt1P50431 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Shmt1P50431 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Shmt1P50431 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Shmt1P50431 Gm27325-201ENSMUST00000175467 74 ntBASIC31.07■■■□□ 2.56
Shmt1P50431 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.06■■■□□ 2.56
Shmt1P50431 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.02■■■□□ 2.56
Shmt1P50431 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
Shmt1P50431 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Shmt1P50431 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.84■■■□□ 2.53
Shmt1P50431 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.81■■■□□ 2.52
Shmt1P50431 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Shmt1P50431 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Shmt1P50431 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Shmt1P50431 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.72■■■□□ 2.51
Shmt1P50431 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.68■■■□□ 2.5
Shmt1P50431 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Shmt1P50431 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Shmt1P50431 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.62■■■□□ 2.49
Shmt1P50431 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Shmt1P50431 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Shmt1P50431 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Shmt1P50431 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
Shmt1P50431 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Shmt1P50431 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.45■■■□□ 2.46
Shmt1P50431 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Shmt1P50431 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.42■■■□□ 2.46
Shmt1P50431 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Shmt1P50431 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Shmt1P50431 Rab21-202ENSMUST00000218831 843 ntBASIC30.31■■■□□ 2.44
Shmt1P50431 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
Shmt1P50431 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.29■■■□□ 2.44
Shmt1P50431 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Shmt1P50431 Gm25262-201ENSMUST00000174934 133 ntBASIC30.19■■■□□ 2.42
Shmt1P50431 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.18■■■□□ 2.42
Shmt1P50431 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
Shmt1P50431 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Shmt1P50431 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
Shmt1P50431 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Shmt1P50431 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Shmt1P50431 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Shmt1P50431 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30■■■□□ 2.39
Shmt1P50431 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.95■■■□□ 2.39
Shmt1P50431 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
Shmt1P50431 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
Shmt1P50431 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Shmt1P50431 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Shmt1P50431 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Shmt1P50431 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Shmt1P50431 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Shmt1P50431 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms