Protein–RNA interactions for Protein: P25799

Nfkb1, Nuclear factor NF-kappa-B p105 subunit, mousemouse

Predictions only

Length 971 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nfkb1P25799 Gm25239-201ENSMUST00000174915 86 ntBASIC39.57■■■■□ 3.93
Nfkb1P25799 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.59■■■■□ 3.45
Nfkb1P25799 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
Nfkb1P25799 Gm15042-201ENSMUST00000120212 883 ntBASIC34.61■■■■□ 3.13
Nfkb1P25799 Gm24109-201ENSMUST00000175489 103 ntBASIC34.28■■■■□ 3.08
Nfkb1P25799 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
Nfkb1P25799 Gm15045-201ENSMUST00000117359 883 ntBASIC33.86■■■■□ 3.01
Nfkb1P25799 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
Nfkb1P25799 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Nfkb1P25799 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
Nfkb1P25799 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
Nfkb1P25799 Gm23366-201ENSMUST00000175022 89 ntBASIC33.05■■■□□ 2.88
Nfkb1P25799 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
Nfkb1P25799 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Nfkb1P25799 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Nfkb1P25799 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Nfkb1P25799 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.06■■■□□ 2.72
Nfkb1P25799 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Nfkb1P25799 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.96■■■□□ 2.71
Nfkb1P25799 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
Nfkb1P25799 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Nfkb1P25799 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.77■■■□□ 2.68
Nfkb1P25799 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
Nfkb1P25799 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.6■■■□□ 2.65
Nfkb1P25799 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
Nfkb1P25799 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Nfkb1P25799 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Nfkb1P25799 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Nfkb1P25799 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Nfkb1P25799 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.38■■■□□ 2.61
Nfkb1P25799 Psd-208ENSMUST00000224556 2034 ntBASIC31.37■■■□□ 2.61
Nfkb1P25799 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Nfkb1P25799 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Nfkb1P25799 Gm25238-201ENSMUST00000174914 89 ntBASIC31.23■■■□□ 2.59
Nfkb1P25799 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.17■■■□□ 2.58
Nfkb1P25799 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
Nfkb1P25799 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Nfkb1P25799 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.81■■■□□ 2.52
Nfkb1P25799 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
Nfkb1P25799 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Nfkb1P25799 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Nfkb1P25799 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Nfkb1P25799 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Nfkb1P25799 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.48■■■□□ 2.47
Nfkb1P25799 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Nfkb1P25799 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Nfkb1P25799 Gm27325-201ENSMUST00000175467 74 ntBASIC30.33■■■□□ 2.45
Nfkb1P25799 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.24■■■□□ 2.43
Nfkb1P25799 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.23■■■□□ 2.43
Nfkb1P25799 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Nfkb1P25799 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
Nfkb1P25799 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Nfkb1P25799 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.1■■■□□ 2.41
Nfkb1P25799 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.04■■■□□ 2.4
Nfkb1P25799 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Nfkb1P25799 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Nfkb1P25799 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.92■■■□□ 2.38
Nfkb1P25799 Gm25262-201ENSMUST00000174934 133 ntBASIC29.87■■■□□ 2.37
Nfkb1P25799 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Nfkb1P25799 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Nfkb1P25799 Rab21-202ENSMUST00000218831 843 ntBASIC29.76■■■□□ 2.35
Nfkb1P25799 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Nfkb1P25799 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Nfkb1P25799 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.66■■■□□ 2.34
Nfkb1P25799 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.66■■■□□ 2.34
Nfkb1P25799 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Nfkb1P25799 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Nfkb1P25799 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Nfkb1P25799 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Nfkb1P25799 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
Nfkb1P25799 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.46■■■□□ 2.31
Nfkb1P25799 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.46■■■□□ 2.31
Nfkb1P25799 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Nfkb1P25799 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
Nfkb1P25799 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Nfkb1P25799 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Nfkb1P25799 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.4■■■□□ 2.3
Nfkb1P25799 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.39■■■□□ 2.3
Nfkb1P25799 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.37■■■□□ 2.29
Nfkb1P25799 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Nfkb1P25799 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Nfkb1P25799 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
Nfkb1P25799 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
Nfkb1P25799 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
Nfkb1P25799 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.3■■■□□ 2.28
Nfkb1P25799 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Nfkb1P25799 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.28
Nfkb1P25799 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Nfkb1P25799 CT025624.2-201ENSMUST00000223609 1909 ntBASIC29.13■■■□□ 2.25
Nfkb1P25799 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.12■■■□□ 2.25
Nfkb1P25799 Gm26115-201ENSMUST00000175605 87 ntBASIC29.11■■■□□ 2.25
Nfkb1P25799 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Nfkb1P25799 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.1■■■□□ 2.25
Nfkb1P25799 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Nfkb1P25799 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Nfkb1P25799 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Nfkb1P25799 Gm8109-201ENSMUST00000194076 746 ntBASIC28.99■■■□□ 2.23
Nfkb1P25799 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Nfkb1P25799 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Nfkb1P25799 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.96■■■□□ 2.23
Retrieved 100 of 76,532 protein–RNA pairs in 218.5 ms