Protein–RNA interactions for Protein: O70400

Pdlim1, PDZ and LIM domain protein 1, mousemouse

Predictions only

Length 327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim1O70400 Gm25239-201ENSMUST00000174915 86 ntBASIC37.05■■■■□ 3.52
Pdlim1O70400 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
Pdlim1O70400 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
Pdlim1O70400 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
Pdlim1O70400 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Pdlim1O70400 Gm15042-201ENSMUST00000120212 883 ntBASIC32.77■■■□□ 2.84
Pdlim1O70400 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
Pdlim1O70400 Gm15045-201ENSMUST00000117359 883 ntBASIC32.11■■■□□ 2.73
Pdlim1O70400 Gm24109-201ENSMUST00000175489 103 ntBASIC31.92■■■□□ 2.7
Pdlim1O70400 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Pdlim1O70400 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Pdlim1O70400 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Pdlim1O70400 Psd-208ENSMUST00000224556 2034 ntBASIC31.19■■■□□ 2.58
Pdlim1O70400 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.12■■■□□ 2.57
Pdlim1O70400 Gm23366-201ENSMUST00000175022 89 ntBASIC31.04■■■□□ 2.56
Pdlim1O70400 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Pdlim1O70400 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Pdlim1O70400 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Pdlim1O70400 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Pdlim1O70400 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Pdlim1O70400 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Pdlim1O70400 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Pdlim1O70400 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Pdlim1O70400 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Pdlim1O70400 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.41■■■□□ 2.46
Pdlim1O70400 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.4■■■□□ 2.46
Pdlim1O70400 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Pdlim1O70400 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Pdlim1O70400 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
Pdlim1O70400 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Pdlim1O70400 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.06■■■□□ 2.4
Pdlim1O70400 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30■■■□□ 2.39
Pdlim1O70400 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Pdlim1O70400 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
Pdlim1O70400 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.5■■■□□ 2.31
Pdlim1O70400 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.48■■■□□ 2.31
Pdlim1O70400 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Pdlim1O70400 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Pdlim1O70400 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
Pdlim1O70400 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Pdlim1O70400 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Pdlim1O70400 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.25■■■□□ 2.27
Pdlim1O70400 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Pdlim1O70400 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Pdlim1O70400 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.12■■■□□ 2.25
Pdlim1O70400 Gm25238-201ENSMUST00000174914 89 ntBASIC29.12■■■□□ 2.25
Pdlim1O70400 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.08■■■□□ 2.25
Pdlim1O70400 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Pdlim1O70400 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Pdlim1O70400 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Pdlim1O70400 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Pdlim1O70400 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Pdlim1O70400 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Pdlim1O70400 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.97■■■□□ 2.23
Pdlim1O70400 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
Pdlim1O70400 Gm27325-201ENSMUST00000175467 74 ntBASIC28.82■■■□□ 2.2
Pdlim1O70400 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Pdlim1O70400 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Pdlim1O70400 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Pdlim1O70400 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28.71■■■□□ 2.19
Pdlim1O70400 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.66■■■□□ 2.18
Pdlim1O70400 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.64■■■□□ 2.18
Pdlim1O70400 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
Pdlim1O70400 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.62■■■□□ 2.17
Pdlim1O70400 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
Pdlim1O70400 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Pdlim1O70400 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Pdlim1O70400 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
Pdlim1O70400 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.46■■■□□ 2.15
Pdlim1O70400 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Pdlim1O70400 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Pdlim1O70400 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Pdlim1O70400 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.4■■■□□ 2.14
Pdlim1O70400 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.34■■■□□ 2.13
Pdlim1O70400 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.33■■■□□ 2.13
Pdlim1O70400 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Pdlim1O70400 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Pdlim1O70400 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Pdlim1O70400 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
Pdlim1O70400 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.13■■■□□ 2.09
Pdlim1O70400 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
Pdlim1O70400 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Pdlim1O70400 Rab21-202ENSMUST00000218831 843 ntBASIC28.05■■■□□ 2.08
Pdlim1O70400 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pdlim1O70400 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
Pdlim1O70400 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Pdlim1O70400 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Pdlim1O70400 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.91■■■□□ 2.06
Pdlim1O70400 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Pdlim1O70400 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.79■■■□□ 2.04
Pdlim1O70400 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Pdlim1O70400 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Pdlim1O70400 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
Pdlim1O70400 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Pdlim1O70400 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Pdlim1O70400 Gm25262-201ENSMUST00000174934 133 ntBASIC27.74■■■□□ 2.03
Pdlim1O70400 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Pdlim1O70400 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Pdlim1O70400 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Pdlim1O70400 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.61■■■□□ 2.01
Retrieved 100 of 76,532 protein–RNA pairs in 143 ms