Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Gm25239-201ENSMUST00000174915 86 ntBASIC39.55■■■■□ 3.92
Sdc4O35988 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.51■■■■□ 3.44
Sdc4O35988 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
Sdc4O35988 Gm15042-201ENSMUST00000120212 883 ntBASIC34.69■■■■□ 3.14
Sdc4O35988 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
Sdc4O35988 Gm24109-201ENSMUST00000175489 103 ntBASIC34.18■■■■□ 3.06
Sdc4O35988 Gm15045-201ENSMUST00000117359 883 ntBASIC33.89■■■■□ 3.02
Sdc4O35988 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
Sdc4O35988 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
Sdc4O35988 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
Sdc4O35988 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
Sdc4O35988 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.21■■■□□ 2.91
Sdc4O35988 Gm23366-201ENSMUST00000175022 89 ntBASIC33.1■■■□□ 2.89
Sdc4O35988 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Sdc4O35988 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Sdc4O35988 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Sdc4O35988 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.2■■■□□ 2.75
Sdc4O35988 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
Sdc4O35988 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
Sdc4O35988 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Sdc4O35988 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.85■■■□□ 2.69
Sdc4O35988 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Sdc4O35988 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Sdc4O35988 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
Sdc4O35988 Psd-208ENSMUST00000224556 2034 ntBASIC31.67■■■□□ 2.66
Sdc4O35988 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Sdc4O35988 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.65■■■□□ 2.66
Sdc4O35988 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
Sdc4O35988 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.55■■■□□ 2.64
Sdc4O35988 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.52■■■□□ 2.64
Sdc4O35988 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Sdc4O35988 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Sdc4O35988 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Sdc4O35988 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Sdc4O35988 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.21■■■□□ 2.59
Sdc4O35988 Gm25238-201ENSMUST00000174914 89 ntBASIC31.15■■■□□ 2.58
Sdc4O35988 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.99■■■□□ 2.55
Sdc4O35988 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Sdc4O35988 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Sdc4O35988 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Sdc4O35988 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Sdc4O35988 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Sdc4O35988 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.64■■■□□ 2.5
Sdc4O35988 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.53■■■□□ 2.48
Sdc4O35988 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.48■■■□□ 2.47
Sdc4O35988 Gm27325-201ENSMUST00000175467 74 ntBASIC30.4■■■□□ 2.46
Sdc4O35988 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Sdc4O35988 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Sdc4O35988 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Sdc4O35988 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.3■■■□□ 2.44
Sdc4O35988 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Sdc4O35988 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
Sdc4O35988 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
Sdc4O35988 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.16■■■□□ 2.42
Sdc4O35988 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Sdc4O35988 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.11■■■□□ 2.41
Sdc4O35988 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.04■■■□□ 2.4
Sdc4O35988 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Sdc4O35988 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Sdc4O35988 Gm25262-201ENSMUST00000174934 133 ntBASIC29.87■■■□□ 2.37
Sdc4O35988 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Sdc4O35988 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Sdc4O35988 Rab21-202ENSMUST00000218831 843 ntBASIC29.82■■■□□ 2.36
Sdc4O35988 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Sdc4O35988 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.79■■■□□ 2.36
Sdc4O35988 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Sdc4O35988 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Sdc4O35988 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.72■■■□□ 2.35
Sdc4O35988 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Sdc4O35988 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
Sdc4O35988 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Sdc4O35988 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
Sdc4O35988 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.63■■■□□ 2.33
Sdc4O35988 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Sdc4O35988 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.55■■■□□ 2.32
Sdc4O35988 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Sdc4O35988 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Sdc4O35988 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
Sdc4O35988 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
Sdc4O35988 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Sdc4O35988 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
Sdc4O35988 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.39■■■□□ 2.3
Sdc4O35988 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Sdc4O35988 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Sdc4O35988 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.31■■■□□ 2.28
Sdc4O35988 CT025624.2-201ENSMUST00000223609 1909 ntBASIC29.3■■■□□ 2.28
Sdc4O35988 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.26■■■□□ 2.27
Sdc4O35988 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.26
Sdc4O35988 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.19■■■□□ 2.26
Sdc4O35988 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Sdc4O35988 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.18■■■□□ 2.26
Sdc4O35988 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Sdc4O35988 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Sdc4O35988 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Sdc4O35988 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Sdc4O35988 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Sdc4O35988 Gm26115-201ENSMUST00000175605 87 ntBASIC29.08■■■□□ 2.25
Sdc4O35988 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Sdc4O35988 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.04■■■□□ 2.24
Sdc4O35988 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29■■■□□ 2.23
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms