Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm25239-201ENSMUST00000174915 86 ntBASIC37.96■■■■□ 3.67
Chd3B1AR17 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
Chd3B1AR17 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
Chd3B1AR17 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Chd3B1AR17 Gm15042-201ENSMUST00000120212 883 ntBASIC33.13■■■□□ 2.89
Chd3B1AR17 Gm24109-201ENSMUST00000175489 103 ntBASIC32.98■■■□□ 2.87
Chd3B1AR17 Gm15045-201ENSMUST00000117359 883 ntBASIC32.7■■■□□ 2.83
Chd3B1AR17 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Chd3B1AR17 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Chd3B1AR17 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
Chd3B1AR17 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
Chd3B1AR17 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Chd3B1AR17 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Chd3B1AR17 Gm23366-201ENSMUST00000175022 89 ntBASIC31.57■■■□□ 2.64
Chd3B1AR17 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Chd3B1AR17 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.1■■■□□ 2.57
Chd3B1AR17 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Chd3B1AR17 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Chd3B1AR17 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.7■■■□□ 2.51
Chd3B1AR17 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Chd3B1AR17 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Chd3B1AR17 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Chd3B1AR17 Psd-208ENSMUST00000224556 2034 ntBASIC30.61■■■□□ 2.49
Chd3B1AR17 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
Chd3B1AR17 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.51■■■□□ 2.48
Chd3B1AR17 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
Chd3B1AR17 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Chd3B1AR17 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Chd3B1AR17 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.41■■■□□ 2.46
Chd3B1AR17 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Chd3B1AR17 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Chd3B1AR17 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC30.15■■■□□ 2.42
Chd3B1AR17 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Chd3B1AR17 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Chd3B1AR17 Gm25238-201ENSMUST00000174914 89 ntBASIC29.95■■■□□ 2.38
Chd3B1AR17 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.94■■■□□ 2.38
Chd3B1AR17 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.9■■■□□ 2.38
Chd3B1AR17 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Chd3B1AR17 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Chd3B1AR17 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Chd3B1AR17 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Chd3B1AR17 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
Chd3B1AR17 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Chd3B1AR17 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC29.29■■■□□ 2.28
Chd3B1AR17 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.28■■■□□ 2.28
Chd3B1AR17 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Chd3B1AR17 Gm27325-201ENSMUST00000175467 74 ntBASIC29.22■■■□□ 2.27
Chd3B1AR17 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.18■■■□□ 2.26
Chd3B1AR17 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Chd3B1AR17 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Chd3B1AR17 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Chd3B1AR17 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.1■■■□□ 2.25
Chd3B1AR17 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Chd3B1AR17 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC29.02■■■□□ 2.24
Chd3B1AR17 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Chd3B1AR17 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.89■■■□□ 2.22
Chd3B1AR17 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.88■■■□□ 2.21
Chd3B1AR17 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.84■■■□□ 2.21
Chd3B1AR17 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.2
Chd3B1AR17 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Chd3B1AR17 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.78■■■□□ 2.2
Chd3B1AR17 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Chd3B1AR17 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Chd3B1AR17 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Chd3B1AR17 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.65■■■□□ 2.18
Chd3B1AR17 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Chd3B1AR17 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Chd3B1AR17 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
Chd3B1AR17 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Chd3B1AR17 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Chd3B1AR17 Rab21-202ENSMUST00000218831 843 ntBASIC28.45■■■□□ 2.14
Chd3B1AR17 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Chd3B1AR17 Gm25262-201ENSMUST00000174934 133 ntBASIC28.43■■■□□ 2.14
Chd3B1AR17 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.4■■■□□ 2.14
Chd3B1AR17 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Chd3B1AR17 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.39■■■□□ 2.13
Chd3B1AR17 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Chd3B1AR17 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
Chd3B1AR17 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Chd3B1AR17 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.31■■■□□ 2.12
Chd3B1AR17 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Chd3B1AR17 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Chd3B1AR17 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
Chd3B1AR17 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC28.2■■■□□ 2.11
Chd3B1AR17 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Chd3B1AR17 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.14■■■□□ 2.1
Chd3B1AR17 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Chd3B1AR17 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Chd3B1AR17 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
Chd3B1AR17 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Chd3B1AR17 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC28.07■■■□□ 2.08
Chd3B1AR17 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Chd3B1AR17 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.96■■■□□ 2.07
Chd3B1AR17 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
Chd3B1AR17 Gm8109-201ENSMUST00000194076 746 ntBASIC27.89■■■□□ 2.06
Chd3B1AR17 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC27.89■■■□□ 2.06
Chd3B1AR17 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.87■■■□□ 2.05
Chd3B1AR17 Gm26115-201ENSMUST00000175605 87 ntBASIC27.85■■■□□ 2.05
Chd3B1AR17 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Chd3B1AR17 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.84■■■□□ 2.05
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms