Protein–RNA interactions for Protein: A0A075B6A6

Trav6n-7, T cell receptor alpha variable 6N-7 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6n-7A0A075B6A6 Gm25239-201ENSMUST00000174915 86 ntBASIC31.59■■■□□ 2.65
Trav6n-7A0A075B6A6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Trav6n-7A0A075B6A6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Trav6n-7A0A075B6A6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Trav6n-7A0A075B6A6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Trav6n-7A0A075B6A6 Gm15042-201ENSMUST00000120212 883 ntBASIC27.92■■■□□ 2.06
Trav6n-7A0A075B6A6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
Trav6n-7A0A075B6A6 Gm15045-201ENSMUST00000117359 883 ntBASIC27.35■■□□□ 1.97
Trav6n-7A0A075B6A6 Gm24109-201ENSMUST00000175489 103 ntBASIC27.21■■□□□ 1.95
Trav6n-7A0A075B6A6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trav6n-7A0A075B6A6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trav6n-7A0A075B6A6 Psd-208ENSMUST00000224556 2034 ntBASIC26.7■■□□□ 1.86
Trav6n-7A0A075B6A6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trav6n-7A0A075B6A6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.56■■□□□ 1.84
Trav6n-7A0A075B6A6 Gm23366-201ENSMUST00000175022 89 ntBASIC26.44■■□□□ 1.82
Trav6n-7A0A075B6A6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Trav6n-7A0A075B6A6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trav6n-7A0A075B6A6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trav6n-7A0A075B6A6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trav6n-7A0A075B6A6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trav6n-7A0A075B6A6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trav6n-7A0A075B6A6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trav6n-7A0A075B6A6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trav6n-7A0A075B6A6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trav6n-7A0A075B6A6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trav6n-7A0A075B6A6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.88■■□□□ 1.73
Trav6n-7A0A075B6A6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trav6n-7A0A075B6A6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trav6n-7A0A075B6A6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trav6n-7A0A075B6A6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
Trav6n-7A0A075B6A6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25.67■■□□□ 1.7
Trav6n-7A0A075B6A6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trav6n-7A0A075B6A6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25.56■■□□□ 1.68
Trav6n-7A0A075B6A6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trav6n-7A0A075B6A6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trav6n-7A0A075B6A6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Trav6n-7A0A075B6A6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Trav6n-7A0A075B6A6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.17■■□□□ 1.62
Trav6n-7A0A075B6A6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Trav6n-7A0A075B6A6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC25.1■■□□□ 1.61
Trav6n-7A0A075B6A6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Trav6n-7A0A075B6A6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trav6n-7A0A075B6A6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Trav6n-7A0A075B6A6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24.95■■□□□ 1.58
Trav6n-7A0A075B6A6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Trav6n-7A0A075B6A6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.86■■□□□ 1.57
Trav6n-7A0A075B6A6 Gm25238-201ENSMUST00000174914 89 ntBASIC24.83■■□□□ 1.57
Trav6n-7A0A075B6A6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Trav6n-7A0A075B6A6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC24.78■■□□□ 1.56
Trav6n-7A0A075B6A6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Trav6n-7A0A075B6A6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Trav6n-7A0A075B6A6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Trav6n-7A0A075B6A6 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.72■■□□□ 1.55
Trav6n-7A0A075B6A6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trav6n-7A0A075B6A6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trav6n-7A0A075B6A6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trav6n-7A0A075B6A6 Gm27325-201ENSMUST00000175467 74 ntBASIC24.53■■□□□ 1.52
Trav6n-7A0A075B6A6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Trav6n-7A0A075B6A6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trav6n-7A0A075B6A6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Trav6n-7A0A075B6A6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.44■■□□□ 1.5
Trav6n-7A0A075B6A6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Trav6n-7A0A075B6A6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.41■■□□□ 1.5
Trav6n-7A0A075B6A6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.4■■□□□ 1.5
Trav6n-7A0A075B6A6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Trav6n-7A0A075B6A6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
Trav6n-7A0A075B6A6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Trav6n-7A0A075B6A6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.3■■□□□ 1.48
Trav6n-7A0A075B6A6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trav6n-7A0A075B6A6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trav6n-7A0A075B6A6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Trav6n-7A0A075B6A6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trav6n-7A0A075B6A6 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.21■■□□□ 1.47
Trav6n-7A0A075B6A6 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Trav6n-7A0A075B6A6 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Trav6n-7A0A075B6A6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trav6n-7A0A075B6A6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.13■■□□□ 1.45
Trav6n-7A0A075B6A6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.12■■□□□ 1.45
Trav6n-7A0A075B6A6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Trav6n-7A0A075B6A6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Trav6n-7A0A075B6A6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC23.95■■□□□ 1.42
Trav6n-7A0A075B6A6 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trav6n-7A0A075B6A6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
Trav6n-7A0A075B6A6 Rab21-202ENSMUST00000218831 843 ntBASIC23.87■■□□□ 1.41
Trav6n-7A0A075B6A6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trav6n-7A0A075B6A6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trav6n-7A0A075B6A6 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trav6n-7A0A075B6A6 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trav6n-7A0A075B6A6 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.79■■□□□ 1.4
Trav6n-7A0A075B6A6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.77■■□□□ 1.4
Trav6n-7A0A075B6A6 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trav6n-7A0A075B6A6 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Trav6n-7A0A075B6A6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.68■■□□□ 1.38
Trav6n-7A0A075B6A6 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Trav6n-7A0A075B6A6 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Trav6n-7A0A075B6A6 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Trav6n-7A0A075B6A6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Trav6n-7A0A075B6A6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Trav6n-7A0A075B6A6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trav6n-7A0A075B6A6 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms