Protein–RNA interactions for Protein: A0A075B626

Trav12n-2, T cell receptor alpha variable 12D-2, mousemouse

Predictions only

Length 113 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12n-2A0A075B626 Gm25239-201ENSMUST00000174915 86 ntBASIC33.74■■■□□ 2.99
Trav12n-2A0A075B626 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Trav12n-2A0A075B626 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Trav12n-2A0A075B626 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Trav12n-2A0A075B626 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Trav12n-2A0A075B626 Gm15042-201ENSMUST00000120212 883 ntBASIC29.82■■■□□ 2.36
Trav12n-2A0A075B626 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
Trav12n-2A0A075B626 Gm15045-201ENSMUST00000117359 883 ntBASIC29.21■■■□□ 2.27
Trav12n-2A0A075B626 Gm24109-201ENSMUST00000175489 103 ntBASIC29.08■■■□□ 2.25
Trav12n-2A0A075B626 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Trav12n-2A0A075B626 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Trav12n-2A0A075B626 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
Trav12n-2A0A075B626 Psd-208ENSMUST00000224556 2034 ntBASIC28.4■■■□□ 2.14
Trav12n-2A0A075B626 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.31■■■□□ 2.12
Trav12n-2A0A075B626 Gm23366-201ENSMUST00000175022 89 ntBASIC28.24■■■□□ 2.11
Trav12n-2A0A075B626 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Trav12n-2A0A075B626 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Trav12n-2A0A075B626 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Trav12n-2A0A075B626 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Trav12n-2A0A075B626 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
Trav12n-2A0A075B626 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Trav12n-2A0A075B626 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Trav12n-2A0A075B626 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
Trav12n-2A0A075B626 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
Trav12n-2A0A075B626 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
Trav12n-2A0A075B626 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.62■■■□□ 2.01
Trav12n-2A0A075B626 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Trav12n-2A0A075B626 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Trav12n-2A0A075B626 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
Trav12n-2A0A075B626 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Trav12n-2A0A075B626 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.35■■□□□ 1.97
Trav12n-2A0A075B626 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.25■■□□□ 1.95
Trav12n-2A0A075B626 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Trav12n-2A0A075B626 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Trav12n-2A0A075B626 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26.89■■□□□ 1.9
Trav12n-2A0A075B626 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Trav12n-2A0A075B626 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Trav12n-2A0A075B626 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trav12n-2A0A075B626 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.77■■□□□ 1.88
Trav12n-2A0A075B626 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trav12n-2A0A075B626 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Trav12n-2A0A075B626 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.66■■□□□ 1.86
Trav12n-2A0A075B626 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trav12n-2A0A075B626 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trav12n-2A0A075B626 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
Trav12n-2A0A075B626 Gm25238-201ENSMUST00000174914 89 ntBASIC26.52■■□□□ 1.84
Trav12n-2A0A075B626 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.49■■□□□ 1.83
Trav12n-2A0A075B626 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.48■■□□□ 1.83
Trav12n-2A0A075B626 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trav12n-2A0A075B626 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Trav12n-2A0A075B626 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Trav12n-2A0A075B626 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trav12n-2A0A075B626 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trav12n-2A0A075B626 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trav12n-2A0A075B626 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.32■■□□□ 1.8
Trav12n-2A0A075B626 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Trav12n-2A0A075B626 Gm27325-201ENSMUST00000175467 74 ntBASIC26.2■■□□□ 1.78
Trav12n-2A0A075B626 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.12■■□□□ 1.77
Trav12n-2A0A075B626 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Trav12n-2A0A075B626 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Trav12n-2A0A075B626 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
Trav12n-2A0A075B626 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.05■■□□□ 1.76
Trav12n-2A0A075B626 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trav12n-2A0A075B626 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trav12n-2A0A075B626 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26■■□□□ 1.75
Trav12n-2A0A075B626 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trav12n-2A0A075B626 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
Trav12n-2A0A075B626 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
Trav12n-2A0A075B626 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.88■■□□□ 1.73
Trav12n-2A0A075B626 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trav12n-2A0A075B626 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trav12n-2A0A075B626 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Trav12n-2A0A075B626 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.8■■□□□ 1.72
Trav12n-2A0A075B626 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.78■■□□□ 1.72
Trav12n-2A0A075B626 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.77■■□□□ 1.72
Trav12n-2A0A075B626 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Trav12n-2A0A075B626 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trav12n-2A0A075B626 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Trav12n-2A0A075B626 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
Trav12n-2A0A075B626 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
Trav12n-2A0A075B626 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC25.57■■□□□ 1.68
Trav12n-2A0A075B626 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Trav12n-2A0A075B626 Rab21-202ENSMUST00000218831 843 ntBASIC25.51■■□□□ 1.67
Trav12n-2A0A075B626 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trav12n-2A0A075B626 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trav12n-2A0A075B626 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trav12n-2A0A075B626 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.38■■□□□ 1.65
Trav12n-2A0A075B626 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trav12n-2A0A075B626 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trav12n-2A0A075B626 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.27■■□□□ 1.64
Trav12n-2A0A075B626 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Trav12n-2A0A075B626 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Trav12n-2A0A075B626 Gm25262-201ENSMUST00000174934 133 ntBASIC25.25■■□□□ 1.63
Trav12n-2A0A075B626 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Trav12n-2A0A075B626 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
Trav12n-2A0A075B626 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC25.23■■□□□ 1.63
Trav12n-2A0A075B626 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Trav12n-2A0A075B626 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Trav12n-2A0A075B626 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Trav12n-2A0A075B626 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms