Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR548AL-201ENST00000578416 97 ntBASIC-3.5□□□□□ -2.97
CCDC88AQ3V6T2 MIR3910-1-201ENST00000580936 111 ntBASIC-3.51□□□□□ -2.97
CCDC88AQ3V6T2 RNU6-471P-201ENST00000383944 106 ntBASIC-3.52□□□□□ -2.97
CCDC88AQ3V6T2 Y_RNA.63-201ENST00000362841 102 ntBASIC-3.54□□□□□ -2.98
CCDC88AQ3V6T2 SNORD45C-201ENST00000383893 79 ntBASIC-3.57□□□□□ -2.98
CCDC88AQ3V6T2 MIR656-201ENST00000385224 78 ntBASIC-3.57□□□□□ -2.98
CCDC88AQ3V6T2 MIR494-201ENST00000349529 81 ntBASIC-3.58□□□□□ -2.98
CCDC88AQ3V6T2 AC099654.10-201ENST00000640395 161 ntBASIC-3.58□□□□□ -2.98
CCDC88AQ3V6T2 SNORD113-1-201ENST00000365321 69 ntBASIC-3.59□□□□□ -2.98
CCDC88AQ3V6T2 RNU6-242P-201ENST00000384359 107 ntBASIC-3.59□□□□□ -2.98
CCDC88AQ3V6T2 RNU6-44P-201ENST00000384045 107 ntBASIC-3.6□□□□□ -2.99
CCDC88AQ3V6T2 MIR1255A-201ENST00000408338 113 ntBASIC-3.6□□□□□ -2.99
CCDC88AQ3V6T2 RNU6-215P-201ENST00000365169 102 ntBASIC-3.6□□□□□ -2.99
CCDC88AQ3V6T2 RNU6-279P-201ENST00000391297 101 ntBASIC-3.61□□□□□ -2.99
CCDC88AQ3V6T2 RNU4-33P-201ENST00000364316 85 ntBASIC-3.62□□□□□ -2.99
CCDC88AQ3V6T2 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.62□□□□□ -2.99
CCDC88AQ3V6T2 RNU6-776P-201ENST00000364403 104 ntBASIC-3.63□□□□□ -2.99
CCDC88AQ3V6T2 RNU6-1022P-201ENST00000365049 104 ntBASIC-3.63□□□□□ -2.99
CCDC88AQ3V6T2 RNU6-665P-201ENST00000384639 107 ntBASIC-3.63□□□□□ -2.99
CCDC88AQ3V6T2 MIR3671-201ENST00000580455 88 ntBASIC-3.63□□□□□ -2.99
CCDC88AQ3V6T2 RNU6-808P-201ENST00000391233 108 ntBASIC-3.64□□□□□ -2.99
CCDC88AQ3V6T2 MIR3202-2-201ENST00000635980 79 ntBASIC-3.64□□□□□ -2.99
CCDC88AQ3V6T2 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-3.67□□□□□ -3
CCDC88AQ3V6T2 AL359920.1-201ENST00000618332 176 ntBASIC-3.67□□□□□ -3
CCDC88AQ3V6T2 RNU6-1340P-201ENST00000384438 107 ntBASIC-3.69□□□□□ -3
CCDC88AQ3V6T2 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.69□□□□□ -3
CCDC88AQ3V6T2 snosnR66.1-201ENST00000391095 99 ntBASIC-3.7□□□□□ -3
CCDC88AQ3V6T2 RNU6-836P-201ENST00000362920 107 ntBASIC-3.71□□□□□ -3
CCDC88AQ3V6T2 Y_RNA.260-201ENST00000364628 101 ntBASIC-3.71□□□□□ -3
CCDC88AQ3V6T2 RNU6-1255P-201ENST00000363434 112 ntBASIC-3.71□□□□□ -3
CCDC88AQ3V6T2 AC139453.2-201ENST00000487255 133 ntBASIC-3.71□□□□□ -3
CCDC88AQ3V6T2 U6.111-201ENST00000636093 83 ntBASIC-3.72□□□□□ -3
CCDC88AQ3V6T2 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.73□□□□□ -3.01
CCDC88AQ3V6T2 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.73□□□□□ -3.01
CCDC88AQ3V6T2 RNU6-857P-201ENST00000515893 110 ntBASIC-3.73□□□□□ -3.01
CCDC88AQ3V6T2 Y_RNA.694-201ENST00000516677 117 ntBASIC-3.73□□□□□ -3.01
CCDC88AQ3V6T2 AL606753.1-201ENST00000427435 87 ntBASIC-3.74□□□□□ -3.01
CCDC88AQ3V6T2 Y_RNA.663-201ENST00000516043 101 ntBASIC-3.76□□□□□ -3.01
CCDC88AQ3V6T2 RNU6-153P-201ENST00000364422 104 ntBASIC-3.77□□□□□ -3.01
CCDC88AQ3V6T2 RNU6-737P-201ENST00000365370 107 ntBASIC-3.79□□□□□ -3.02
CCDC88AQ3V6T2 MIR5582-201ENST00000579697 68 ntBASIC-3.79□□□□□ -3.02
CCDC88AQ3V6T2 Y_RNA.335-201ENST00000365299 96 ntBASIC-3.79□□□□□ -3.02
CCDC88AQ3V6T2 MIR124-1-201ENST00000385275 85 ntBASIC-3.79□□□□□ -3.02
CCDC88AQ3V6T2 RNU6-854P-201ENST00000364036 107 ntBASIC-3.81□□□□□ -3.02
CCDC88AQ3V6T2 AC114801.3-201ENST00000510231 177 ntBASIC-3.81□□□□□ -3.02
CCDC88AQ3V6T2 MIR3668-201ENST00000582138 75 ntBASIC-3.84□□□□□ -3.02
CCDC88AQ3V6T2 Y_RNA.386-201ENST00000383913 105 ntBASIC-3.86□□□□□ -3.03
CCDC88AQ3V6T2 Y_RNA.345-201ENST00000365384 92 ntBASIC-3.86□□□□□ -3.03
CCDC88AQ3V6T2 RNU6-1312P-201ENST00000362425 108 ntBASIC-3.87□□□□□ -3.03
CCDC88AQ3V6T2 RNU6-446P-201ENST00000362827 106 ntBASIC-3.87□□□□□ -3.03
CCDC88AQ3V6T2 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.88□□□□□ -3.03
CCDC88AQ3V6T2 SNORD115.2-201ENST00000391126 59 ntBASIC-3.88□□□□□ -3.03
CCDC88AQ3V6T2 RNU6-788P-201ENST00000390967 104 ntBASIC-3.9□□□□□ -3.03
CCDC88AQ3V6T2 RNU6-1204P-201ENST00000363948 107 ntBASIC-3.91□□□□□ -3.04
CCDC88AQ3V6T2 SNORA26.2-201ENST00000390922 122 ntBASIC-3.91□□□□□ -3.04
CCDC88AQ3V6T2 RNU6-1326P-201ENST00000391262 107 ntBASIC-3.91□□□□□ -3.04
CCDC88AQ3V6T2 MIR4662A-201ENST00000637499 67 ntBASIC-3.91□□□□□ -3.04
CCDC88AQ3V6T2 RNU6-1008P-201ENST00000384160 104 ntBASIC-3.93□□□□□ -3.04
CCDC88AQ3V6T2 SNORD115-45-201ENST00000391078 81 ntBASIC-3.95□□□□□ -3.04
CCDC88AQ3V6T2 MIR545-201ENST00000385085 106 ntBASIC-3.96□□□□□ -3.04
CCDC88AQ3V6T2 SNORD113-4-201ENST00000364802 75 ntBASIC-3.98□□□□□ -3.05
CCDC88AQ3V6T2 RNU6-406P-201ENST00000516470 107 ntBASIC-3.99□□□□□ -3.05
CCDC88AQ3V6T2 Y_RNA.406-201ENST00000383984 100 ntBASIC-4.01□□□□□ -3.05
CCDC88AQ3V6T2 MT-TR-201ENST00000387439 65 ntBASIC-4.02□□□□□ -3.05
CCDC88AQ3V6T2 Y_RNA.388-201ENST00000383919 113 ntBASIC-4.04□□□□□ -3.06
CCDC88AQ3V6T2 RNU6-422P-201ENST00000384632 107 ntBASIC-4.04□□□□□ -3.06
CCDC88AQ3V6T2 MIR363-201ENST00000384840 75 ntBASIC-4.04□□□□□ -3.06
CCDC88AQ3V6T2 RNU6-829P-201ENST00000363700 112 ntBASIC-4.05□□□□□ -3.06
CCDC88AQ3V6T2 Y_RNA.379-201ENST00000365653 102 ntBASIC-4.05□□□□□ -3.06
CCDC88AQ3V6T2 RNU6-573P-201ENST00000383938 106 ntBASIC-4.05□□□□□ -3.06
CCDC88AQ3V6T2 RNU6-59P-201ENST00000384787 107 ntBASIC-4.05□□□□□ -3.06
CCDC88AQ3V6T2 Y_RNA.565-201ENST00000384719 101 ntBASIC-4.07□□□□□ -3.06
CCDC88AQ3V6T2 RNU6-1043P-201ENST00000410355 99 ntBASIC-4.08□□□□□ -3.06
CCDC88AQ3V6T2 RNU6-838P-201ENST00000363399 108 ntBASIC-4.09□□□□□ -3.06
CCDC88AQ3V6T2 SNORD78.1-201ENST00000390866 65 ntBASIC-4.09□□□□□ -3.06
CCDC88AQ3V6T2 RNY4P29-201ENST00000410801 97 ntBASIC-4.09□□□□□ -3.06
CCDC88AQ3V6T2 SNORD73B-201ENST00000364394 72 ntBASIC-4.12□□□□□ -3.07
CCDC88AQ3V6T2 MIR548AH-201ENST00000637109 76 ntBASIC-4.13□□□□□ -3.07
CCDC88AQ3V6T2 MIR1302-4-201ENST00000408701 150 ntBASIC-4.17□□□□□ -3.08
CCDC88AQ3V6T2 RNU6-1298P-201ENST00000362456 101 ntBASIC-4.2□□□□□ -3.08
CCDC88AQ3V6T2 MIR633-201ENST00000384821 98 ntBASIC-4.21□□□□□ -3.08
CCDC88AQ3V6T2 Y_RNA.685-201ENST00000516532 108 ntBASIC-4.22□□□□□ -3.09
CCDC88AQ3V6T2 RNU4-85P-201ENST00000364675 123 ntBASIC-4.26□□□□□ -3.09
CCDC88AQ3V6T2 RNA5SP225-201ENST00000410874 135 ntBASIC-4.26□□□□□ -3.09
CCDC88AQ3V6T2 AL603908.1-201ENST00000406098 201 ntBASIC-4.29□□□□□ -3.1
CCDC88AQ3V6T2 RNU6-499P-201ENST00000365615 107 ntBASIC-4.3□□□□□ -3.1
CCDC88AQ3V6T2 RNA5SP170-201ENST00000517150 101 ntBASIC-4.32□□□□□ -3.1
CCDC88AQ3V6T2 RNU6-986P-201ENST00000363133 102 ntBASIC-4.36□□□□□ -3.11
CCDC88AQ3V6T2 RNU6-753P-201ENST00000363926 107 ntBASIC-4.36□□□□□ -3.11
CCDC88AQ3V6T2 AC125388.1-201ENST00000459631 156 ntBASIC-4.39□□□□□ -3.11
CCDC88AQ3V6T2 RNU6-1275P-201ENST00000391087 107 ntBASIC-4.44□□□□□ -3.12
CCDC88AQ3V6T2 RNA5SP449-201ENST00000516871 130 ntBASIC-4.45□□□□□ -3.12
CCDC88AQ3V6T2 MIR548F3-201ENST00000408509 87 ntBASIC-4.47□□□□□ -3.13
CCDC88AQ3V6T2 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-4.49□□□□□ -3.13
CCDC88AQ3V6T2 RNU6-614P-201ENST00000384369 107 ntBASIC-4.53□□□□□ -3.13
CCDC88AQ3V6T2 AC079150.2-201ENST00000443733 78 ntBASIC-4.53□□□□□ -3.13
CCDC88AQ3V6T2 U6.59-201ENST00000615686 107 ntBASIC-4.53□□□□□ -3.13
CCDC88AQ3V6T2 DLEU2_4.2-201ENST00000616613 58 ntBASIC-4.53□□□□□ -3.13
CCDC88AQ3V6T2 U2.22-201ENST00000636441 106 ntBASIC-4.53□□□□□ -3.13
CCDC88AQ3V6T2 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-4.56□□□□□ -3.14
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms