Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.59□□□□□ -2.82
CHD9Q3L8U1 MIR5588-201ENST00000581890 63 ntBASIC-2.59□□□□□ -2.82
CHD9Q3L8U1 RNU6-640P-201ENST00000363693 105 ntBASIC-2.59□□□□□ -2.82
CHD9Q3L8U1 RNY4P30-201ENST00000410216 95 ntBASIC-2.59□□□□□ -2.82
CHD9Q3L8U1 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.6□□□□□ -2.83
CHD9Q3L8U1 RNU6-49P-201ENST00000384256 107 ntBASIC-2.6□□□□□ -2.83
CHD9Q3L8U1 RNU6-539P-201ENST00000516665 103 ntBASIC-2.6□□□□□ -2.83
CHD9Q3L8U1 RNU6-242P-201ENST00000384359 107 ntBASIC-2.6□□□□□ -2.83
CHD9Q3L8U1 RNU6-1045P-201ENST00000516321 107 ntBASIC-2.6□□□□□ -2.83
CHD9Q3L8U1 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 RNU6-32P-201ENST00000383948 107 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 RNU6-13P-201ENST00000384248 107 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 RNU6-12P-201ENST00000384604 107 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 RNU6-41P-201ENST00000384741 107 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.61□□□□□ -2.83
CHD9Q3L8U1 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.62□□□□□ -2.83
CHD9Q3L8U1 MIR488-201ENST00000365739 83 ntBASIC-2.63□□□□□ -2.83
CHD9Q3L8U1 Y_RNA.464-201ENST00000384282 110 ntBASIC-2.64□□□□□ -2.83
CHD9Q3L8U1 RNU6-463P-201ENST00000384340 107 ntBASIC-2.64□□□□□ -2.83
CHD9Q3L8U1 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.64□□□□□ -2.83
CHD9Q3L8U1 RNU6-327P-201ENST00000516270 127 ntBASIC-2.64□□□□□ -2.83
CHD9Q3L8U1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.64□□□□□ -2.83
CHD9Q3L8U1 SNORD30.1-201ENST00000391309 70 ntBASIC-2.66□□□□□ -2.84
CHD9Q3L8U1 RNU6-820P-201ENST00000384273 107 ntBASIC-2.67□□□□□ -2.84
CHD9Q3L8U1 AL365222.1-201ENST00000614661 98 ntBASIC-2.67□□□□□ -2.84
CHD9Q3L8U1 RNY4P19-201ENST00000362530 96 ntBASIC-2.68□□□□□ -2.84
CHD9Q3L8U1 RNU6-147P-201ENST00000383983 107 ntBASIC-2.68□□□□□ -2.84
CHD9Q3L8U1 RNU6-829P-201ENST00000363700 112 ntBASIC-2.7□□□□□ -2.84
CHD9Q3L8U1 RNU6-919P-201ENST00000516731 104 ntBASIC-2.71□□□□□ -2.84
CHD9Q3L8U1 RNU6-471P-201ENST00000383944 106 ntBASIC-2.73□□□□□ -2.85
CHD9Q3L8U1 RNU6-1154P-201ENST00000391001 104 ntBASIC-2.73□□□□□ -2.85
CHD9Q3L8U1 Y_RNA.703-201ENST00000516846 111 ntBASIC-2.73□□□□□ -2.85
CHD9Q3L8U1 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.75□□□□□ -2.85
CHD9Q3L8U1 RNU6-294P-201ENST00000364999 102 ntBASIC-2.75□□□□□ -2.85
CHD9Q3L8U1 AC090425.1-201ENST00000610007 140 ntBASIC-2.75□□□□□ -2.85
CHD9Q3L8U1 SNORA26.2-201ENST00000390922 122 ntBASIC-2.78□□□□□ -2.85
CHD9Q3L8U1 MIR1255A-201ENST00000408338 113 ntBASIC-2.78□□□□□ -2.85
CHD9Q3L8U1 RNU6-787P-201ENST00000384032 107 ntBASIC-2.79□□□□□ -2.86
CHD9Q3L8U1 SNORD113-4-201ENST00000364802 75 ntBASIC-2.8□□□□□ -2.86
CHD9Q3L8U1 AC114801.3-201ENST00000510231 177 ntBASIC-2.8□□□□□ -2.86
CHD9Q3L8U1 RNU6-986P-201ENST00000363133 102 ntBASIC-2.81□□□□□ -2.86
CHD9Q3L8U1 U6.111-201ENST00000636093 83 ntBASIC-2.81□□□□□ -2.86
CHD9Q3L8U1 RNU6-81P-201ENST00000365608 104 ntBASIC-2.82□□□□□ -2.86
CHD9Q3L8U1 RNU6-838P-201ENST00000363399 108 ntBASIC-2.82□□□□□ -2.86
CHD9Q3L8U1 RNU6-1117P-201ENST00000384525 104 ntBASIC-2.82□□□□□ -2.86
CHD9Q3L8U1 SNORD113-1-201ENST00000365321 69 ntBASIC-2.83□□□□□ -2.86
CHD9Q3L8U1 RNU6-59P-201ENST00000384787 107 ntBASIC-2.83□□□□□ -2.86
CHD9Q3L8U1 MIR3133-201ENST00000583157 78 ntBASIC-2.84□□□□□ -2.86
CHD9Q3L8U1 MIR494-201ENST00000349529 81 ntBASIC-2.85□□□□□ -2.87
CHD9Q3L8U1 RNU6-446P-201ENST00000362827 106 ntBASIC-2.85□□□□□ -2.87
CHD9Q3L8U1 SNORD20-201ENST00000384550 80 ntBASIC-2.85□□□□□ -2.87
CHD9Q3L8U1 MIR450A2-201ENST00000385022 100 ntBASIC-2.86□□□□□ -2.87
CHD9Q3L8U1 MIR3202-2-201ENST00000635980 79 ntBASIC-2.86□□□□□ -2.87
CHD9Q3L8U1 RNU6-313P-201ENST00000516317 112 ntBASIC-2.87□□□□□ -2.87
CHD9Q3L8U1 RNU6-627P-201ENST00000364032 102 ntBASIC-2.87□□□□□ -2.87
CHD9Q3L8U1 RNA5SP89-201ENST00000410300 108 ntBASIC-2.87□□□□□ -2.87
CHD9Q3L8U1 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.89□□□□□ -2.87
CHD9Q3L8U1 Y_RNA.386-201ENST00000383913 105 ntBASIC-2.91□□□□□ -2.88
CHD9Q3L8U1 RNU6-857P-201ENST00000515893 110 ntBASIC-2.92□□□□□ -2.88
CHD9Q3L8U1 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.92□□□□□ -2.88
CHD9Q3L8U1 MIR4662A-201ENST00000637499 67 ntBASIC-2.93□□□□□ -2.88
CHD9Q3L8U1 SNORD78.1-201ENST00000390866 65 ntBASIC-2.94□□□□□ -2.88
CHD9Q3L8U1 MIR548M-201ENST00000408260 86 ntBASIC-2.94□□□□□ -2.88
CHD9Q3L8U1 RNU6-44P-201ENST00000384045 107 ntBASIC-2.94□□□□□ -2.88
CHD9Q3L8U1 RNU6-794P-201ENST00000517261 64 ntBASIC-2.94□□□□□ -2.88
CHD9Q3L8U1 RNU6-753P-201ENST00000363926 107 ntBASIC-2.94□□□□□ -2.88
CHD9Q3L8U1 RNU6-215P-201ENST00000365169 102 ntBASIC-2.94□□□□□ -2.88
CHD9Q3L8U1 RNU6-573P-201ENST00000383938 106 ntBASIC-2.96□□□□□ -2.88
CHD9Q3L8U1 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.96□□□□□ -2.88
CHD9Q3L8U1 RNU6-279P-201ENST00000391297 101 ntBASIC-2.97□□□□□ -2.89
CHD9Q3L8U1 RNU6-1024P-201ENST00000384199 107 ntBASIC-3.02□□□□□ -2.89
CHD9Q3L8U1 RNU6-1011P-201ENST00000384668 107 ntBASIC-3.02□□□□□ -2.89
CHD9Q3L8U1 RNA5SP225-201ENST00000410874 135 ntBASIC-3.03□□□□□ -2.89
CHD9Q3L8U1 AL606753.1-201ENST00000427435 87 ntBASIC-3.06□□□□□ -2.9
CHD9Q3L8U1 MIR5582-201ENST00000579697 68 ntBASIC-3.06□□□□□ -2.9
CHD9Q3L8U1 RNU6-620P-201ENST00000384017 96 ntBASIC-3.06□□□□□ -2.9
CHD9Q3L8U1 RNU6-499P-201ENST00000365615 107 ntBASIC-3.08□□□□□ -2.9
CHD9Q3L8U1 RNU6-406P-201ENST00000516470 107 ntBASIC-3.08□□□□□ -2.9
CHD9Q3L8U1 MIR3910-1-201ENST00000580936 111 ntBASIC-3.08□□□□□ -2.9
CHD9Q3L8U1 RNU6-614P-201ENST00000384369 107 ntBASIC-3.08□□□□□ -2.9
CHD9Q3L8U1 U6.59-201ENST00000615686 107 ntBASIC-3.08□□□□□ -2.9
CHD9Q3L8U1 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.09□□□□□ -2.9
CHD9Q3L8U1 Y_RNA.388-201ENST00000383919 113 ntBASIC-3.1□□□□□ -2.91
CHD9Q3L8U1 MIR548F3-201ENST00000408509 87 ntBASIC-3.1□□□□□ -2.91
CHD9Q3L8U1 AP001094.1-201ENST00000579805 193 ntBASIC-3.13□□□□□ -2.91
CHD9Q3L8U1 Y_RNA.685-201ENST00000516532 108 ntBASIC-3.13□□□□□ -2.91
CHD9Q3L8U1 DLEU2_4.2-201ENST00000616613 58 ntBASIC-3.14□□□□□ -2.91
CHD9Q3L8U1 RNU6-936P-201ENST00000384005 107 ntBASIC-3.15□□□□□ -2.91
CHD9Q3L8U1 MIR4719-201ENST00000585233 84 ntBASIC-3.15□□□□□ -2.91
CHD9Q3L8U1 RNU6-485P-201ENST00000363475 107 ntBASIC-3.16□□□□□ -2.92
CHD9Q3L8U1 RNU6-930P-201ENST00000390938 100 ntBASIC-3.16□□□□□ -2.92
CHD9Q3L8U1 AC079150.2-201ENST00000443733 78 ntBASIC-3.16□□□□□ -2.92
CHD9Q3L8U1 SNORD73B-201ENST00000364394 72 ntBASIC-3.17□□□□□ -2.92
CHD9Q3L8U1 MIR1302-4-201ENST00000408701 150 ntBASIC-3.18□□□□□ -2.92
CHD9Q3L8U1 MIR3671-201ENST00000580455 88 ntBASIC-3.18□□□□□ -2.92
CHD9Q3L8U1 U6.103-201ENST00000637085 61 ntBASIC-3.18□□□□□ -2.92
CHD9Q3L8U1 RNU6-153P-201ENST00000364422 104 ntBASIC-3.19□□□□□ -2.92
CHD9Q3L8U1 RNU6-1275P-201ENST00000391087 107 ntBASIC-3.19□□□□□ -2.92
CHD9Q3L8U1 RNU6-894P-201ENST00000517094 105 ntBASIC-3.21□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 231.6 ms