Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SNORD116-24-201ENST00000384549 92 ntBASIC-2.28□□□□□ -2.77
CHD9Q3L8U1 Y_RNA.565-201ENST00000384719 101 ntBASIC-2.28□□□□□ -2.77
CHD9Q3L8U1 MIR548H4-201ENST00000408689 111 ntBASIC-2.28□□□□□ -2.77
CHD9Q3L8U1 RNU4-85P-201ENST00000364675 123 ntBASIC-2.28□□□□□ -2.78
CHD9Q3L8U1 RNU6-219P-201ENST00000364728 107 ntBASIC-2.28□□□□□ -2.78
CHD9Q3L8U1 Y_RNA.702-201ENST00000516843 96 ntBASIC-2.28□□□□□ -2.78
CHD9Q3L8U1 AL117187.1-201ENST00000555482 181 ntBASIC-2.28□□□□□ -2.78
CHD9Q3L8U1 RNU6-675P-201ENST00000384236 104 ntBASIC-2.29□□□□□ -2.78
CHD9Q3L8U1 RNU6-411P-201ENST00000384451 107 ntBASIC-2.29□□□□□ -2.78
CHD9Q3L8U1 MIR548S-201ENST00000581352 82 ntBASIC-2.29□□□□□ -2.78
CHD9Q3L8U1 AC044792.1-201ENST00000593294 196 ntBASIC-2.3□□□□□ -2.78
CHD9Q3L8U1 Y_RNA.149-201ENST00000363558 117 ntBASIC-2.3□□□□□ -2.78
CHD9Q3L8U1 MIR606-201ENST00000384851 96 ntBASIC-2.3□□□□□ -2.78
CHD9Q3L8U1 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.3□□□□□ -2.78
CHD9Q3L8U1 RNU6-844P-201ENST00000517175 102 ntBASIC-2.3□□□□□ -2.78
CHD9Q3L8U1 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-2.3□□□□□ -2.78
CHD9Q3L8U1 RNU6-907P-201ENST00000390924 102 ntBASIC-2.31□□□□□ -2.78
CHD9Q3L8U1 MIR1302-3-201ENST00000408128 138 ntBASIC-2.31□□□□□ -2.78
CHD9Q3L8U1 Y_RNA.506-201ENST00000384494 102 ntBASIC-2.32□□□□□ -2.78
CHD9Q3L8U1 RNU6-854P-201ENST00000364036 107 ntBASIC-2.32□□□□□ -2.78
CHD9Q3L8U1 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.32□□□□□ -2.78
CHD9Q3L8U1 RNU6-379P-201ENST00000363813 104 ntBASIC-2.33□□□□□ -2.78
CHD9Q3L8U1 RNU7-171P-201ENST00000459581 62 ntBASIC-2.33□□□□□ -2.78
CHD9Q3L8U1 RNU6-422P-201ENST00000384632 107 ntBASIC-2.33□□□□□ -2.78
CHD9Q3L8U1 MIR568-201ENST00000385036 95 ntBASIC-2.33□□□□□ -2.78
CHD9Q3L8U1 MIR548X-201ENST00000580069 75 ntBASIC-2.33□□□□□ -2.78
CHD9Q3L8U1 RNU6-776P-201ENST00000364403 104 ntBASIC-2.35□□□□□ -2.79
CHD9Q3L8U1 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.35□□□□□ -2.79
CHD9Q3L8U1 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.36□□□□□ -2.79
CHD9Q3L8U1 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.36□□□□□ -2.79
CHD9Q3L8U1 RNU6-1168P-201ENST00000390831 104 ntBASIC-2.36□□□□□ -2.79
CHD9Q3L8U1 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.37□□□□□ -2.79
CHD9Q3L8U1 SNORD115.2-201ENST00000391126 59 ntBASIC-2.37□□□□□ -2.79
CHD9Q3L8U1 Y_RNA.544-201ENST00000384650 113 ntBASIC-2.37□□□□□ -2.79
CHD9Q3L8U1 RNU6-388P-201ENST00000517012 105 ntBASIC-2.38□□□□□ -2.79
CHD9Q3L8U1 RNU6-389P-201ENST00000517048 105 ntBASIC-2.38□□□□□ -2.79
CHD9Q3L8U1 MTCYBP6-201ENST00000441810 138 ntBASIC-2.39□□□□□ -2.79
CHD9Q3L8U1 RNU6-255P-201ENST00000516957 105 ntBASIC-2.39□□□□□ -2.79
CHD9Q3L8U1 MALAT1.1-201ENST00000618249 95 ntBASIC-2.39□□□□□ -2.79
CHD9Q3L8U1 Y_RNA.61-201ENST00000362835 102 ntBASIC-2.39□□□□□ -2.79
CHD9Q3L8U1 RNU6-1131P-201ENST00000364955 107 ntBASIC-2.39□□□□□ -2.79
CHD9Q3L8U1 RNU6-738P-201ENST00000384531 106 ntBASIC-2.39□□□□□ -2.79
CHD9Q3L8U1 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.4□□□□□ -2.79
CHD9Q3L8U1 RNU6-959P-201ENST00000384671 107 ntBASIC-2.4□□□□□ -2.79
CHD9Q3L8U1 MIR656-201ENST00000385224 78 ntBASIC-2.4□□□□□ -2.79
CHD9Q3L8U1 RNU6-257P-201ENST00000410238 98 ntBASIC-2.4□□□□□ -2.79
CHD9Q3L8U1 Y_RNA.720-201ENST00000517166 92 ntBASIC-2.41□□□□□ -2.79
CHD9Q3L8U1 MIR548BB-201ENST00000626714 66 ntBASIC-2.41□□□□□ -2.8
CHD9Q3L8U1 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-2.42□□□□□ -2.8
CHD9Q3L8U1 RNU6-788P-201ENST00000390967 104 ntBASIC-2.42□□□□□ -2.8
CHD9Q3L8U1 MIR124-1-201ENST00000385275 85 ntBASIC-2.43□□□□□ -2.8
CHD9Q3L8U1 MT-TG-201ENST00000387429 68 ntBASIC-2.43□□□□□ -2.8
CHD9Q3L8U1 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.43□□□□□ -2.8
CHD9Q3L8U1 RNU6-1255P-201ENST00000363434 112 ntBASIC-2.44□□□□□ -2.8
CHD9Q3L8U1 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.44□□□□□ -2.8
CHD9Q3L8U1 RNU6-687P-201ENST00000516443 89 ntBASIC-2.45□□□□□ -2.8
CHD9Q3L8U1 RNU6-589P-201ENST00000516485 107 ntBASIC-2.45□□□□□ -2.8
CHD9Q3L8U1 RNU6-122P-201ENST00000516818 107 ntBASIC-2.45□□□□□ -2.8
CHD9Q3L8U1 MIR548AH-201ENST00000637109 76 ntBASIC-2.45□□□□□ -2.8
CHD9Q3L8U1 MIR4511-201ENST00000582784 87 ntBASIC-2.45□□□□□ -2.8
CHD9Q3L8U1 U7.4-201ENST00000614961 63 ntBASIC-2.45□□□□□ -2.8
CHD9Q3L8U1 MIR3134-201ENST00000579433 74 ntBASIC-2.46□□□□□ -2.8
CHD9Q3L8U1 SNORD45C-201ENST00000383893 79 ntBASIC-2.47□□□□□ -2.8
CHD9Q3L8U1 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-2.47□□□□□ -2.8
CHD9Q3L8U1 AC008267.6-201ENST00000441664 139 ntBASIC-2.47□□□□□ -2.8
CHD9Q3L8U1 MIR3938-201ENST00000582157 103 ntBASIC-2.47□□□□□ -2.8
CHD9Q3L8U1 RNU7-200P-201ENST00000516105 62 ntBASIC-2.47□□□□□ -2.81
CHD9Q3L8U1 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.48□□□□□ -2.81
CHD9Q3L8U1 MIR4679-1-201ENST00000637619 75 ntBASIC-2.48□□□□□ -2.81
CHD9Q3L8U1 RNU6-886P-201ENST00000384319 105 ntBASIC-2.49□□□□□ -2.81
CHD9Q3L8U1 MIR548AL-201ENST00000578416 97 ntBASIC-2.49□□□□□ -2.81
CHD9Q3L8U1 RNU6-1008P-201ENST00000384160 104 ntBASIC-2.5□□□□□ -2.81
CHD9Q3L8U1 AC110620.1-201ENST00000416042 228 ntBASIC-2.5□□□□□ -2.81
CHD9Q3L8U1 SNORD116-14-201ENST00000383894 92 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 SNORD116-17-201ENST00000383929 92 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 SNORD116-15-201ENST00000384445 92 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 SNORD116-19-201ENST00000384729 92 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 IGLL4P-201ENST00000614590 133 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 RNU6-209P-201ENST00000384118 107 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 RNU6-22P-201ENST00000384355 107 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 AC103706.3-201ENST00000636297 85 ntBASIC-2.52□□□□□ -2.81
CHD9Q3L8U1 MIR450A1-201ENST00000362262 91 ntBASIC-2.53□□□□□ -2.81
CHD9Q3L8U1 RNU4-33P-201ENST00000364316 85 ntBASIC-2.53□□□□□ -2.81
CHD9Q3L8U1 MIR4503-201ENST00000582187 83 ntBASIC-2.53□□□□□ -2.81
CHD9Q3L8U1 MIR4666B-201ENST00000578142 81 ntBASIC-2.54□□□□□ -2.82
CHD9Q3L8U1 SNORA25.4-201ENST00000363666 124 ntBASIC-2.54□□□□□ -2.82
CHD9Q3L8U1 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.54□□□□□ -2.82
CHD9Q3L8U1 MIR545-201ENST00000385085 106 ntBASIC-2.55□□□□□ -2.82
CHD9Q3L8U1 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.55□□□□□ -2.82
CHD9Q3L8U1 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.55□□□□□ -2.82
CHD9Q3L8U1 RNU6-634P-201ENST00000459134 106 ntBASIC-2.55□□□□□ -2.82
CHD9Q3L8U1 MIR1245B-201ENST00000636115 69 ntBASIC-2.55□□□□□ -2.82
CHD9Q3L8U1 RNY1P5-201ENST00000383890 115 ntBASIC-2.56□□□□□ -2.82
CHD9Q3L8U1 RNU6-836P-201ENST00000362920 107 ntBASIC-2.57□□□□□ -2.82
CHD9Q3L8U1 RNU6-346P-201ENST00000516288 111 ntBASIC-2.57□□□□□ -2.82
CHD9Q3L8U1 RNU6-1212P-201ENST00000517023 104 ntBASIC-2.57□□□□□ -2.82
CHD9Q3L8U1 Y_RNA.345-201ENST00000365384 92 ntBASIC-2.57□□□□□ -2.82
CHD9Q3L8U1 RNU6-808P-201ENST00000391233 108 ntBASIC-2.57□□□□□ -2.82
CHD9Q3L8U1 RNU6-871P-201ENST00000516122 100 ntBASIC-2.57□□□□□ -2.82
CHD9Q3L8U1 MIR4712-201ENST00000583750 82 ntBASIC-2.58□□□□□ -2.82
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms