Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.38□□□□□ -2.63
LIME1Q9H400 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.38□□□□□ -2.63
LIME1Q9H400 RPL35AP4-201ENST00000412007 102 ntBASIC-1.38□□□□□ -2.63
LIME1Q9H400 RNU6-523P-201ENST00000516304 54 ntBASIC-1.38□□□□□ -2.63
LIME1Q9H400 RNU6-540P-201ENST00000384622 101 ntBASIC-1.39□□□□□ -2.63
LIME1Q9H400 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.39□□□□□ -2.63
LIME1Q9H400 RNU6-857P-201ENST00000515893 110 ntBASIC-1.39□□□□□ -2.63
LIME1Q9H400 MIR3170-201ENST00000582699 77 ntBASIC-1.39□□□□□ -2.63
LIME1Q9H400 RNU6-92P-201ENST00000605893 104 ntBASIC-1.39□□□□□ -2.63
LIME1Q9H400 MIR6502-201ENST00000617296 76 ntBASIC-1.39□□□□□ -2.63
LIME1Q9H400 RNU6-573P-201ENST00000383938 106 ntBASIC-1.41□□□□□ -2.64
LIME1Q9H400 RNU6-663P-201ENST00000391105 106 ntBASIC-1.41□□□□□ -2.64
LIME1Q9H400 MIR1302-4-201ENST00000408701 150 ntBASIC-1.41□□□□□ -2.64
LIME1Q9H400 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.42□□□□□ -2.64
LIME1Q9H400 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.42□□□□□ -2.64
LIME1Q9H400 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.42□□□□□ -2.64
LIME1Q9H400 MIR889-201ENST00000401280 79 ntBASIC-1.43□□□□□ -2.64
LIME1Q9H400 MIR1255A-201ENST00000408338 113 ntBASIC-1.43□□□□□ -2.64
LIME1Q9H400 HLA-S-202ENST00000425174 53 ntBASIC-1.43□□□□□ -2.64
LIME1Q9H400 AC091912.2-201ENST00000624798 167 ntBASIC-1.43□□□□□ -2.64
LIME1Q9H400 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.44□□□□□ -2.64
LIME1Q9H400 MIR4770-201ENST00000579149 58 ntBASIC-1.44□□□□□ -2.64
LIME1Q9H400 SNORD60.1-201ENST00000362451 73 ntBASIC-1.45□□□□□ -2.64
LIME1Q9H400 SNORA25.4-201ENST00000363666 124 ntBASIC-1.45□□□□□ -2.64
LIME1Q9H400 RNU6-172P-201ENST00000411000 93 ntBASIC-1.45□□□□□ -2.64
LIME1Q9H400 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.45□□□□□ -2.64
LIME1Q9H400 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.46□□□□□ -2.64
LIME1Q9H400 RNU6-995P-201ENST00000391244 107 ntBASIC-1.46□□□□□ -2.64
LIME1Q9H400 RNU7-151P-201ENST00000516930 53 ntBASIC-1.46□□□□□ -2.64
LIME1Q9H400 MIR5591-201ENST00000578248 65 ntBASIC-1.46□□□□□ -2.64
LIME1Q9H400 MIR23C-201ENST00000579846 100 ntBASIC-1.46□□□□□ -2.64
LIME1Q9H400 MIR125B1-201ENST00000385236 88 ntBASIC-1.47□□□□□ -2.64
LIME1Q9H400 SNORD78.1-201ENST00000390866 65 ntBASIC-1.47□□□□□ -2.64
LIME1Q9H400 RNU6-871P-201ENST00000516122 100 ntBASIC-1.47□□□□□ -2.64
LIME1Q9H400 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.47□□□□□ -2.64
LIME1Q9H400 MIR7978-201ENST00000636158 59 ntBASIC-1.47□□□□□ -2.64
LIME1Q9H400 AC018880.2-201ENST00000414265 201 ntBASIC-1.48□□□□□ -2.65
LIME1Q9H400 RNU6-226P-201ENST00000363778 107 ntBASIC-1.49□□□□□ -2.65
LIME1Q9H400 MIR4520-1-201ENST00000582609 70 ntBASIC-1.49□□□□□ -2.65
LIME1Q9H400 MIR6874-201ENST00000635894 71 ntBASIC-1.49□□□□□ -2.65
LIME1Q9H400 RNU6-247P-201ENST00000362636 107 ntBASIC-1.5□□□□□ -2.65
LIME1Q9H400 RNU6-258P-201ENST00000390884 101 ntBASIC-1.5□□□□□ -2.65
LIME1Q9H400 RNU6-79P-201ENST00000362511 107 ntBASIC-1.51□□□□□ -2.65
LIME1Q9H400 RNU6-400P-201ENST00000391173 106 ntBASIC-1.52□□□□□ -2.65
LIME1Q9H400 SNORD30.1-201ENST00000391309 70 ntBASIC-1.52□□□□□ -2.65
LIME1Q9H400 RNU7-160P-201ENST00000516660 62 ntBASIC-1.52□□□□□ -2.65
LIME1Q9H400 MIR579-201ENST00000385221 98 ntBASIC-1.53□□□□□ -2.65
LIME1Q9H400 RNA5SP225-201ENST00000410874 135 ntBASIC-1.53□□□□□ -2.65
LIME1Q9H400 RNU6-539P-201ENST00000516665 103 ntBASIC-1.53□□□□□ -2.65
LIME1Q9H400 RNU6-122P-201ENST00000516818 107 ntBASIC-1.53□□□□□ -2.65
LIME1Q9H400 AC005520.4-201ENST00000604337 90 ntBASIC-1.53□□□□□ -2.65
LIME1Q9H400 MIR1246-201ENST00000636535 73 ntBASIC-1.53□□□□□ -2.65
LIME1Q9H400 SNORA25.5-201ENST00000363782 126 ntBASIC-1.54□□□□□ -2.66
LIME1Q9H400 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.54□□□□□ -2.66
LIME1Q9H400 U6.111-201ENST00000636093 83 ntBASIC-1.54□□□□□ -2.66
LIME1Q9H400 RNU6-669P-201ENST00000365575 107 ntBASIC-1.55□□□□□ -2.66
LIME1Q9H400 RNU6-231P-201ENST00000517122 103 ntBASIC-1.55□□□□□ -2.66
LIME1Q9H400 MIR4511-201ENST00000582784 87 ntBASIC-1.55□□□□□ -2.66
LIME1Q9H400 SNORA27.2-201ENST00000363365 126 ntBASIC-1.56□□□□□ -2.66
LIME1Q9H400 RNU6-649P-201ENST00000384463 107 ntBASIC-1.56□□□□□ -2.66
LIME1Q9H400 SNORD63.2-201ENST00000516303 64 ntBASIC-1.56□□□□□ -2.66
LIME1Q9H400 MIR7110-201ENST00000612638 86 ntBASIC-1.56□□□□□ -2.66
LIME1Q9H400 MIR4679-1-201ENST00000637619 75 ntBASIC-1.56□□□□□ -2.66
LIME1Q9H400 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.57□□□□□ -2.66
LIME1Q9H400 AC103706.3-201ENST00000636297 85 ntBASIC-1.57□□□□□ -2.66
LIME1Q9H400 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.58□□□□□ -2.66
LIME1Q9H400 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.59□□□□□ -2.66
LIME1Q9H400 RNA5SP86-201ENST00000390869 98 ntBASIC-1.59□□□□□ -2.66
LIME1Q9H400 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.6□□□□□ -2.67
LIME1Q9H400 AC120024.2-201ENST00000576526 175 ntBASIC-1.61□□□□□ -2.67
LIME1Q9H400 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.62□□□□□ -2.67
LIME1Q9H400 RNU6-119P-201ENST00000364882 107 ntBASIC-1.62□□□□□ -2.67
LIME1Q9H400 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.62□□□□□ -2.67
LIME1Q9H400 RNU6-828P-201ENST00000364876 107 ntBASIC-1.63□□□□□ -2.67
LIME1Q9H400 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.63□□□□□ -2.67
LIME1Q9H400 RNU6-810P-201ENST00000364001 107 ntBASIC-1.64□□□□□ -2.67
LIME1Q9H400 RNY4P7-201ENST00000364600 96 ntBASIC-1.64□□□□□ -2.67
LIME1Q9H400 SNORA40B-201ENST00000385573 128 ntBASIC-1.64□□□□□ -2.67
LIME1Q9H400 MIR4662A-201ENST00000637499 67 ntBASIC-1.64□□□□□ -2.67
LIME1Q9H400 RNU6-940P-201ENST00000363433 104 ntBASIC-1.65□□□□□ -2.67
LIME1Q9H400 RNU6-776P-201ENST00000364403 104 ntBASIC-1.65□□□□□ -2.67
LIME1Q9H400 RNU6-563P-201ENST00000364872 108 ntBASIC-1.65□□□□□ -2.67
LIME1Q9H400 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.65□□□□□ -2.67
LIME1Q9H400 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.65□□□□□ -2.67
LIME1Q9H400 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.66□□□□□ -2.68
LIME1Q9H400 RNU6-800P-201ENST00000384473 103 ntBASIC-1.66□□□□□ -2.68
LIME1Q9H400 SNORD116.2-201ENST00000391251 93 ntBASIC-1.66□□□□□ -2.68
LIME1Q9H400 RNU7-119P-201ENST00000459279 63 ntBASIC-1.66□□□□□ -2.68
LIME1Q9H400 RNU6-974P-201ENST00000384099 108 ntBASIC-1.67□□□□□ -2.68
LIME1Q9H400 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.67□□□□□ -2.68
LIME1Q9H400 SNORA40.16-201ENST00000517238 121 ntBASIC-1.67□□□□□ -2.68
LIME1Q9H400 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.68□□□□□ -2.68
LIME1Q9H400 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.68□□□□□ -2.68
LIME1Q9H400 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.69□□□□□ -2.68
LIME1Q9H400 MIR548H1-201ENST00000408610 102 ntBASIC-1.69□□□□□ -2.68
LIME1Q9H400 RNU6-695P-201ENST00000391157 104 ntBASIC-1.7□□□□□ -2.68
LIME1Q9H400 MIR487B-201ENST00000385021 84 ntBASIC-1.72□□□□□ -2.68
LIME1Q9H400 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.72□□□□□ -2.68
LIME1Q9H400 SNORD18.1-201ENST00000363807 70 ntBASIC-1.73□□□□□ -2.69
LIME1Q9H400 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.73□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms