Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.78□□□□□ -2.85
CCDC43Q96MW1 RNU7-151P-201ENST00000516930 53 ntBASIC-2.78□□□□□ -2.85
CCDC43Q96MW1 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.79□□□□□ -2.86
CCDC43Q96MW1 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.79□□□□□ -2.86
CCDC43Q96MW1 SNORA27.2-201ENST00000363365 126 ntBASIC-2.8□□□□□ -2.86
CCDC43Q96MW1 RNY1P1-201ENST00000364372 112 ntBASIC-2.8□□□□□ -2.86
CCDC43Q96MW1 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.81□□□□□ -2.86
CCDC43Q96MW1 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.81□□□□□ -2.86
CCDC43Q96MW1 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.82□□□□□ -2.86
CCDC43Q96MW1 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.83□□□□□ -2.86
CCDC43Q96MW1 RNU6-669P-201ENST00000365575 107 ntBASIC-2.83□□□□□ -2.86
CCDC43Q96MW1 Y_RNA.629-201ENST00000411368 105 ntBASIC-2.83□□□□□ -2.86
CCDC43Q96MW1 SNORD63.2-201ENST00000516303 64 ntBASIC-2.83□□□□□ -2.86
CCDC43Q96MW1 MIR5588-201ENST00000581890 63 ntBASIC-2.83□□□□□ -2.86
CCDC43Q96MW1 RNU6-1131P-201ENST00000364955 107 ntBASIC-2.84□□□□□ -2.86
CCDC43Q96MW1 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.84□□□□□ -2.86
CCDC43Q96MW1 RNU6-172P-201ENST00000411000 93 ntBASIC-2.84□□□□□ -2.86
CCDC43Q96MW1 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.84□□□□□ -2.86
CCDC43Q96MW1 MIR548AM-201ENST00000584298 74 ntBASIC-2.84□□□□□ -2.86
CCDC43Q96MW1 MIR7978-201ENST00000636158 59 ntBASIC-2.84□□□□□ -2.86
CCDC43Q96MW1 MIR579-201ENST00000385221 98 ntBASIC-2.85□□□□□ -2.87
CCDC43Q96MW1 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.86□□□□□ -2.87
CCDC43Q96MW1 MIR125B1-201ENST00000385236 88 ntBASIC-2.86□□□□□ -2.87
CCDC43Q96MW1 RNU6-70P-201ENST00000516438 60 ntBASIC-2.86□□□□□ -2.87
CCDC43Q96MW1 AC005520.4-201ENST00000604337 90 ntBASIC-2.86□□□□□ -2.87
CCDC43Q96MW1 AC013734.1-201ENST00000619329 111 ntBASIC-2.86□□□□□ -2.87
CCDC43Q96MW1 RNU6-895P-201ENST00000384125 103 ntBASIC-2.87□□□□□ -2.87
CCDC43Q96MW1 RNU6-49P-201ENST00000384256 107 ntBASIC-2.87□□□□□ -2.87
CCDC43Q96MW1 MIR154-201ENST00000385243 84 ntBASIC-2.87□□□□□ -2.87
CCDC43Q96MW1 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.88□□□□□ -2.87
CCDC43Q96MW1 RNU6-979P-201ENST00000383896 107 ntBASIC-2.88□□□□□ -2.87
CCDC43Q96MW1 SNORD116-24-201ENST00000384549 92 ntBASIC-2.88□□□□□ -2.87
CCDC43Q96MW1 SNORD20-201ENST00000384550 80 ntBASIC-2.89□□□□□ -2.87
CCDC43Q96MW1 RNU6-523P-201ENST00000516304 54 ntBASIC-2.9□□□□□ -2.87
CCDC43Q96MW1 RNA5SP405-201ENST00000363059 114 ntBASIC-2.91□□□□□ -2.88
CCDC43Q96MW1 AL606753.1-201ENST00000427435 87 ntBASIC-2.91□□□□□ -2.88
CCDC43Q96MW1 RNU6-919P-201ENST00000516731 104 ntBASIC-2.92□□□□□ -2.88
CCDC43Q96MW1 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.92□□□□□ -2.88
CCDC43Q96MW1 RNU6-215P-201ENST00000365169 102 ntBASIC-2.93□□□□□ -2.88
CCDC43Q96MW1 SNORD113-1-201ENST00000365321 69 ntBASIC-2.93□□□□□ -2.88
CCDC43Q96MW1 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.94□□□□□ -2.88
CCDC43Q96MW1 MIR4712-201ENST00000583750 82 ntBASIC-2.94□□□□□ -2.88
CCDC43Q96MW1 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.94□□□□□ -2.88
CCDC43Q96MW1 RNY3P8-201ENST00000411366 126 ntBASIC-2.95□□□□□ -2.88
CCDC43Q96MW1 RNU6-789P-201ENST00000517105 102 ntBASIC-2.95□□□□□ -2.88
CCDC43Q96MW1 RNU7-171P-201ENST00000459581 62 ntBASIC-2.96□□□□□ -2.88
CCDC43Q96MW1 MIR1245B-201ENST00000636115 69 ntBASIC-2.96□□□□□ -2.88
CCDC43Q96MW1 U6.97-201ENST00000636904 101 ntBASIC-2.96□□□□□ -2.88
CCDC43Q96MW1 SNORD115-31-201ENST00000365318 82 ntBASIC-2.97□□□□□ -2.88
CCDC43Q96MW1 RNU6-194P-201ENST00000363862 105 ntBASIC-2.99□□□□□ -2.89
CCDC43Q96MW1 RNU7-160P-201ENST00000516660 62 ntBASIC-2.99□□□□□ -2.89
CCDC43Q96MW1 Y_RNA.139-201ENST00000363464 102 ntBASIC-3□□□□□ -2.89
CCDC43Q96MW1 RNU6-974P-201ENST00000384099 108 ntBASIC-3□□□□□ -2.89
CCDC43Q96MW1 RNU6-542P-201ENST00000516405 103 ntBASIC-3□□□□□ -2.89
CCDC43Q96MW1 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-3□□□□□ -2.89
CCDC43Q96MW1 RNA5SP89-201ENST00000410300 108 ntBASIC-3.01□□□□□ -2.89
CCDC43Q96MW1 RNU6-92P-201ENST00000605893 104 ntBASIC-3.01□□□□□ -2.89
CCDC43Q96MW1 Y_RNA.788-201ENST00000622394 112 ntBASIC-3.01□□□□□ -2.89
CCDC43Q96MW1 Y_RNA.211-201ENST00000364164 101 ntBASIC-3.02□□□□□ -2.89
CCDC43Q96MW1 RNU4-88P-201ENST00000411220 86 ntBASIC-3.02□□□□□ -2.89
CCDC43Q96MW1 MIR548AI-201ENST00000579940 88 ntBASIC-3.02□□□□□ -2.89
CCDC43Q96MW1 TARS-215ENST00000626210 201 ntTSL 5 BASIC-3.02□□□□□ -2.89
CCDC43Q96MW1 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.03□□□□□ -2.89
CCDC43Q96MW1 RNU6-44P-201ENST00000384045 107 ntBASIC-3.03□□□□□ -2.89
CCDC43Q96MW1 MIR3134-201ENST00000579433 74 ntBASIC-3.03□□□□□ -2.89
CCDC43Q96MW1 SNORD18C-201ENST00000362704 69 ntBASIC-3.05□□□□□ -2.9
CCDC43Q96MW1 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.05□□□□□ -2.9
CCDC43Q96MW1 Y_RNA.94-201ENST00000363068 106 ntBASIC-3.05□□□□□ -2.9
CCDC43Q96MW1 RNU6-1306P-201ENST00000365219 99 ntBASIC-3.05□□□□□ -2.9
CCDC43Q96MW1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-3.05□□□□□ -2.9
CCDC43Q96MW1 RNY4P30-201ENST00000410216 95 ntBASIC-3.05□□□□□ -2.9
CCDC43Q96MW1 MIR494-201ENST00000349529 81 ntBASIC-3.07□□□□□ -2.9
CCDC43Q96MW1 MIR548W-201ENST00000581970 74 ntBASIC-3.07□□□□□ -2.9
CCDC43Q96MW1 RNU6-828P-201ENST00000364876 107 ntBASIC-3.08□□□□□ -2.9
CCDC43Q96MW1 RNU6-520P-201ENST00000384717 104 ntBASIC-3.08□□□□□ -2.9
CCDC43Q96MW1 RNU6-687P-201ENST00000516443 89 ntBASIC-3.08□□□□□ -2.9
CCDC43Q96MW1 RNU6-242P-201ENST00000384359 107 ntBASIC-3.09□□□□□ -2.9
CCDC43Q96MW1 snoU13.10-201ENST00000459301 103 ntBASIC-3.09□□□□□ -2.9
CCDC43Q96MW1 MIR7110-201ENST00000612638 86 ntBASIC-3.09□□□□□ -2.9
CCDC43Q96MW1 SNORD60.1-201ENST00000362451 73 ntBASIC-3.1□□□□□ -2.91
CCDC43Q96MW1 Y_RNA.291-201ENST00000364886 113 ntBASIC-3.1□□□□□ -2.91
CCDC43Q96MW1 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.11□□□□□ -2.91
CCDC43Q96MW1 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.12□□□□□ -2.91
CCDC43Q96MW1 RNU6-1276P-201ENST00000365372 104 ntBASIC-3.13□□□□□ -2.91
CCDC43Q96MW1 RNU6-231P-201ENST00000517122 103 ntBASIC-3.13□□□□□ -2.91
CCDC43Q96MW1 SNORD60-201ENST00000383903 83 ntBASIC-3.14□□□□□ -2.91
CCDC43Q96MW1 Y_RNA.591-201ENST00000410228 104 ntBASIC-3.14□□□□□ -2.91
CCDC43Q96MW1 RNU6-810P-201ENST00000364001 107 ntBASIC-3.15□□□□□ -2.91
CCDC43Q96MW1 MIR581-201ENST00000384895 96 ntBASIC-3.15□□□□□ -2.91
CCDC43Q96MW1 MIR202-201ENST00000362219 110 ntBASIC-3.17□□□□□ -2.92
CCDC43Q96MW1 RNU6-649P-201ENST00000384463 107 ntBASIC-3.17□□□□□ -2.92
CCDC43Q96MW1 MIR548N-201ENST00000408742 75 ntBASIC-3.17□□□□□ -2.92
CCDC43Q96MW1 MIR4666B-201ENST00000578142 81 ntBASIC-3.17□□□□□ -2.92
CCDC43Q96MW1 MIR450A2-201ENST00000385022 100 ntBASIC-3.18□□□□□ -2.92
CCDC43Q96MW1 RNU6-1206P-201ENST00000516339 103 ntBASIC-3.19□□□□□ -2.92
CCDC43Q96MW1 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-3.19□□□□□ -2.92
CCDC43Q96MW1 RNU6-411P-201ENST00000384451 107 ntBASIC-3.2□□□□□ -2.92
CCDC43Q96MW1 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-3.2□□□□□ -2.92
CCDC43Q96MW1 SNORD116.2-201ENST00000391251 93 ntBASIC-3.21□□□□□ -2.92
CCDC43Q96MW1 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.22□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms