Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 U7.4-201ENST00000614961 63 ntBASIC-1.73□□□□□ -2.69
VPS39Q96JC1 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.73□□□□□ -2.69
VPS39Q96JC1 RNU6-563P-201ENST00000364872 108 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-540P-201ENST00000384622 101 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-995P-201ENST00000391244 107 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-92P-201ENST00000605893 104 ntBASIC-1.74□□□□□ -2.69
VPS39Q96JC1 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 RNU6-573P-201ENST00000383938 106 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 AC120024.2-201ENST00000576526 175 ntBASIC-1.75□□□□□ -2.69
VPS39Q96JC1 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 SNORD73B-201ENST00000364394 72 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 RNU6-669P-201ENST00000365575 107 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 SNORD63.2-201ENST00000516303 64 ntBASIC-1.76□□□□□ -2.69
VPS39Q96JC1 SNORD60.1-201ENST00000362451 73 ntBASIC-1.77□□□□□ -2.69
VPS39Q96JC1 RNU6-974P-201ENST00000384099 108 ntBASIC-1.77□□□□□ -2.69
VPS39Q96JC1 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 MIR1285-2-201ENST00000408311 88 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 RNU6-634P-201ENST00000459134 106 ntBASIC-1.78□□□□□ -2.69
VPS39Q96JC1 RNA5SP170-201ENST00000517150 101 ntBASIC-1.79□□□□□ -2.7
VPS39Q96JC1 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 SNORD18.1-201ENST00000363807 70 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 RNU6-663P-201ENST00000391105 106 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 RNU6-523P-201ENST00000516304 54 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 MIR23C-201ENST00000579846 100 ntBASIC-1.8□□□□□ -2.7
VPS39Q96JC1 MIR1246-201ENST00000636535 73 ntBASIC-1.81□□□□□ -2.7
VPS39Q96JC1 MIR365A-201ENST00000362260 87 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 MIR125B1-201ENST00000385236 88 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 AC005520.4-201ENST00000604337 90 ntBASIC-1.82□□□□□ -2.7
VPS39Q96JC1 RNU6-695P-201ENST00000391157 104 ntBASIC-1.83□□□□□ -2.7
VPS39Q96JC1 MIR1255A-201ENST00000408338 113 ntBASIC-1.83□□□□□ -2.7
VPS39Q96JC1 RNU6-228P-201ENST00000362700 106 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 AC108019.1-201ENST00000512540 175 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 AC013734.1-201ENST00000619329 111 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.84□□□□□ -2.7
VPS39Q96JC1 SNORA27.2-201ENST00000363365 126 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 RNY4P29-201ENST00000410801 97 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 MIR4441-201ENST00000582623 100 ntBASIC-1.85□□□□□ -2.71
VPS39Q96JC1 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 RNU6-983P-201ENST00000516004 103 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 RNU6-231P-201ENST00000517122 103 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 MIR3202-2-201ENST00000635980 79 ntBASIC-1.86□□□□□ -2.71
VPS39Q96JC1 RNU6-810P-201ENST00000364001 107 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 SNORD30.1-201ENST00000391309 70 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 RNU6-857P-201ENST00000515893 110 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 MIR7110-201ENST00000612638 86 ntBASIC-1.87□□□□□ -2.71
VPS39Q96JC1 SNORD116.2-201ENST00000391251 93 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 RNY3P8-201ENST00000411366 126 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 MIR4756-201ENST00000577874 78 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 MIR3123-201ENST00000583417 75 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 U4.2-201ENST00000618561 85 ntBASIC-1.88□□□□□ -2.71
VPS39Q96JC1 SNORA26.2-201ENST00000390922 122 ntBASIC-1.89□□□□□ -2.71
VPS39Q96JC1 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 SNORA25.5-201ENST00000363782 126 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 U6.97-201ENST00000636904 101 ntBASIC-1.9□□□□□ -2.71
VPS39Q96JC1 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.91□□□□□ -2.72
VPS39Q96JC1 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.92□□□□□ -2.72
VPS39Q96JC1 SNORA25.4-201ENST00000363666 124 ntBASIC-1.92□□□□□ -2.72
VPS39Q96JC1 RNU6-841P-201ENST00000383872 107 ntBASIC-1.92□□□□□ -2.72
VPS39Q96JC1 RNU6-279P-201ENST00000391297 101 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 RNA5SP225-201ENST00000410874 135 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 RNU7-160P-201ENST00000516660 62 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 RNU6-122P-201ENST00000516818 107 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 MIR548AM-201ENST00000584298 74 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 MIR664B-201ENST00000626756 61 ntBASIC-1.94□□□□□ -2.72
VPS39Q96JC1 SNORD114-3-201ENST00000364969 75 ntBASIC-1.97□□□□□ -2.72
VPS39Q96JC1 RNU6-649P-201ENST00000384463 107 ntBASIC-1.97□□□□□ -2.72
VPS39Q96JC1 RNU6-520P-201ENST00000384717 104 ntBASIC-1.98□□□□□ -2.73
VPS39Q96JC1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.98□□□□□ -2.73
VPS39Q96JC1 U6.111-201ENST00000636093 83 ntBASIC-1.98□□□□□ -2.73
VPS39Q96JC1 RNU6-828P-201ENST00000364876 107 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 SNORD78.1-201ENST00000390866 65 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 RNU6-871P-201ENST00000516122 100 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 SNORA40.16-201ENST00000517238 121 ntBASIC-1.99□□□□□ -2.73
VPS39Q96JC1 SNORA40B-201ENST00000385573 128 ntBASIC-2□□□□□ -2.73
VPS39Q96JC1 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.01□□□□□ -2.73
VPS39Q96JC1 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.01□□□□□ -2.73
VPS39Q96JC1 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 RNU4-88P-201ENST00000411220 86 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 MIR4511-201ENST00000582784 87 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 MIR4723-201ENST00000585070 81 ntBASIC-2.02□□□□□ -2.73
VPS39Q96JC1 RNU6-980P-201ENST00000516925 103 ntBASIC-2.03□□□□□ -2.73
VPS39Q96JC1 MIR202-201ENST00000362219 110 ntBASIC-2.04□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms