Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 U6.58-201ENST00000613107 107 ntBASIC-0.96□□□□□ -2.56
NKX3-1Q99801 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.97□□□□□ -2.56
NKX3-1Q99801 SNORD115-33-201ENST00000363723 82 ntBASIC-0.97□□□□□ -2.56
NKX3-1Q99801 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.97□□□□□ -2.56
NKX3-1Q99801 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.98□□□□□ -2.57
NKX3-1Q99801 RNA5SP215-201ENST00000363440 122 ntBASIC-0.98□□□□□ -2.57
NKX3-1Q99801 RNU6-732P-201ENST00000516033 103 ntBASIC-0.98□□□□□ -2.57
NKX3-1Q99801 SCARNA17-201ENST00000516183 144 ntBASIC-0.98□□□□□ -2.57
NKX3-1Q99801 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.98□□□□□ -2.57
NKX3-1Q99801 MIR382-201ENST00000637119 76 ntBASIC-0.98□□□□□ -2.57
NKX3-1Q99801 RNU6-895P-201ENST00000384125 103 ntBASIC-0.99□□□□□ -2.57
NKX3-1Q99801 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.99□□□□□ -2.57
NKX3-1Q99801 RNU6-228P-201ENST00000362700 106 ntBASIC-1□□□□□ -2.57
NKX3-1Q99801 SNORD113-2-201ENST00000391082 72 ntBASIC-1□□□□□ -2.57
NKX3-1Q99801 SNORD19-201ENST00000391191 68 ntBASIC-1□□□□□ -2.57
NKX3-1Q99801 MIR1255A-201ENST00000408338 113 ntBASIC-1.01□□□□□ -2.57
NKX3-1Q99801 AP002795.1-201ENST00000534879 84 ntBASIC-1.01□□□□□ -2.57
NKX3-1Q99801 U7.4-201ENST00000614961 63 ntBASIC-1.01□□□□□ -2.57
NKX3-1Q99801 MIR3202-2-201ENST00000635980 79 ntBASIC-1.01□□□□□ -2.57
NKX3-1Q99801 SNORD83B-201ENST00000386745 93 ntBASIC-1.02□□□□□ -2.57
NKX3-1Q99801 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.02□□□□□ -2.57
NKX3-1Q99801 RNU6-411P-201ENST00000384451 107 ntBASIC-1.03□□□□□ -2.57
NKX3-1Q99801 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.03□□□□□ -2.57
NKX3-1Q99801 RNA5SP266-201ENST00000410273 108 ntBASIC-1.04□□□□□ -2.58
NKX3-1Q99801 RNU6-598P-201ENST00000364017 105 ntBASIC-1.05□□□□□ -2.58
NKX3-1Q99801 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.05□□□□□ -2.58
NKX3-1Q99801 SNORA41B-201ENST00000384785 128 ntBASIC-1.05□□□□□ -2.58
NKX3-1Q99801 AL353691.2-201ENST00000443795 59 ntBASIC-1.05□□□□□ -2.58
NKX3-1Q99801 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.05□□□□□ -2.58
NKX3-1Q99801 snoU83B.1-201ENST00000517136 88 ntBASIC-1.06□□□□□ -2.58
NKX3-1Q99801 MIR4324-201ENST00000584846 72 ntBASIC-1.06□□□□□ -2.58
NKX3-1Q99801 MIR4679-1-201ENST00000637619 75 ntBASIC-1.06□□□□□ -2.58
NKX3-1Q99801 RNU6-696P-201ENST00000390834 107 ntBASIC-1.07□□□□□ -2.58
NKX3-1Q99801 RNU6-857P-201ENST00000515893 110 ntBASIC-1.07□□□□□ -2.58
NKX3-1Q99801 RNY1P9-201ENST00000532431 109 ntBASIC-1.07□□□□□ -2.58
NKX3-1Q99801 MIR6738-201ENST00000619620 64 ntBASIC-1.07□□□□□ -2.58
NKX3-1Q99801 RNU6-540P-201ENST00000384622 101 ntBASIC-1.09□□□□□ -2.58
NKX3-1Q99801 MIR548Q-201ENST00000408404 100 ntBASIC-1.09□□□□□ -2.58
NKX3-1Q99801 RNU6-523P-201ENST00000516304 54 ntBASIC-1.09□□□□□ -2.58
NKX3-1Q99801 U2.18-201ENST00000622185 84 ntBASIC-1.09□□□□□ -2.58
NKX3-1Q99801 MIR5683-201ENST00000636514 76 ntBASIC-1.09□□□□□ -2.58
NKX3-1Q99801 MIR429-201ENST00000362106 83 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 SNORD116-16-201ENST00000384533 92 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 SNORD78.1-201ENST00000390866 65 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 RNU6-279P-201ENST00000391297 101 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 RNA5SP225-201ENST00000410874 135 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 MIR4499-201ENST00000584834 69 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 uc_338.19-201ENST00000616808 99 ntBASIC-1.1□□□□□ -2.59
NKX3-1Q99801 RNU6-10P-201ENST00000384036 107 ntBASIC-1.11□□□□□ -2.59
NKX3-1Q99801 MIR507-201ENST00000385234 94 ntBASIC-1.11□□□□□ -2.59
NKX3-1Q99801 MIR889-201ENST00000401280 79 ntBASIC-1.11□□□□□ -2.59
NKX3-1Q99801 SNORD57-201ENST00000448188 72 ntBASIC-1.11□□□□□ -2.59
NKX3-1Q99801 RNU6-634P-201ENST00000459134 106 ntBASIC-1.11□□□□□ -2.59
NKX3-1Q99801 RNA5SP26-201ENST00000362406 119 ntBASIC-1.12□□□□□ -2.59
NKX3-1Q99801 RNA5SP331-201ENST00000364986 107 ntBASIC-1.12□□□□□ -2.59
NKX3-1Q99801 RNU6-24P-201ENST00000384440 107 ntBASIC-1.12□□□□□ -2.59
NKX3-1Q99801 MIR587-201ENST00000384845 96 ntBASIC-1.12□□□□□ -2.59
NKX3-1Q99801 AL627230.5-201ENST00000619807 58 ntBASIC-1.12□□□□□ -2.59
NKX3-1Q99801 MIR1302-4-201ENST00000408701 150 ntBASIC-1.14□□□□□ -2.59
NKX3-1Q99801 RPL35AP4-201ENST00000412007 102 ntBASIC-1.14□□□□□ -2.59
NKX3-1Q99801 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.15□□□□□ -2.59
NKX3-1Q99801 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.15□□□□□ -2.59
NKX3-1Q99801 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.15□□□□□ -2.59
NKX3-1Q99801 RNU6-542P-201ENST00000516405 103 ntBASIC-1.15□□□□□ -2.59
NKX3-1Q99801 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.16□□□□□ -2.6
NKX3-1Q99801 RNU6-663P-201ENST00000391105 106 ntBASIC-1.16□□□□□ -2.6
NKX3-1Q99801 RNU7-134P-201ENST00000458997 64 ntBASIC-1.16□□□□□ -2.6
NKX3-1Q99801 MIR4490-201ENST00000582647 84 ntBASIC-1.16□□□□□ -2.6
NKX3-1Q99801 MIR6818-201ENST00000621576 65 ntBASIC-1.16□□□□□ -2.6
NKX3-1Q99801 SNORD1B-201ENST00000363091 84 ntBASIC-1.17□□□□□ -2.6
NKX3-1Q99801 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.17□□□□□ -2.6
NKX3-1Q99801 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.18□□□□□ -2.6
NKX3-1Q99801 RNU6-630P-201ENST00000391258 106 ntBASIC-1.18□□□□□ -2.6
NKX3-1Q99801 MIR520D-201ENST00000385002 87 ntBASIC-1.2□□□□□ -2.6
NKX3-1Q99801 MIR29B1-201ENST00000385015 81 ntBASIC-1.2□□□□□ -2.6
NKX3-1Q99801 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.2□□□□□ -2.6
NKX3-1Q99801 MIR378F-201ENST00000578143 78 ntBASIC-1.2□□□□□ -2.6
NKX3-1Q99801 RNU6-92P-201ENST00000605893 104 ntBASIC-1.2□□□□□ -2.6
NKX3-1Q99801 SNORD30.1-201ENST00000391309 70 ntBASIC-1.21□□□□□ -2.6
NKX3-1Q99801 RNA5SP192-201ENST00000364404 120 ntBASIC-1.22□□□□□ -2.6
NKX3-1Q99801 AC090616.4-201ENST00000448026 115 ntBASIC-1.22□□□□□ -2.6
NKX3-1Q99801 MIR3115-201ENST00000577915 68 ntBASIC-1.22□□□□□ -2.6
NKX3-1Q99801 MIR4320-201ENST00000636981 65 ntBASIC-1.22□□□□□ -2.6
NKX3-1Q99801 MIR548AA1-201ENST00000384971 97 ntBASIC-1.23□□□□□ -2.61
NKX3-1Q99801 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.23□□□□□ -2.61
NKX3-1Q99801 RNU6-608P-201ENST00000383927 104 ntBASIC-1.24□□□□□ -2.61
NKX3-1Q99801 MIR3170-201ENST00000582699 77 ntBASIC-1.24□□□□□ -2.61
NKX3-1Q99801 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.24□□□□□ -2.61
NKX3-1Q99801 SNORD60.1-201ENST00000362451 73 ntBASIC-1.25□□□□□ -2.61
NKX3-1Q99801 RNU6-172P-201ENST00000411000 93 ntBASIC-1.25□□□□□ -2.61
NKX3-1Q99801 MIR579-201ENST00000385221 98 ntBASIC-1.26□□□□□ -2.61
NKX3-1Q99801 RNU7-151P-201ENST00000516930 53 ntBASIC-1.26□□□□□ -2.61
NKX3-1Q99801 MIR3165-201ENST00000579874 75 ntBASIC-1.26□□□□□ -2.61
NKX3-1Q99801 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.27□□□□□ -2.61
NKX3-1Q99801 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.27□□□□□ -2.61
NKX3-1Q99801 RNU6-871P-201ENST00000516122 100 ntBASIC-1.27□□□□□ -2.61
NKX3-1Q99801 SNORA25.4-201ENST00000363666 124 ntBASIC-1.28□□□□□ -2.61
NKX3-1Q99801 RNU6-649P-201ENST00000384463 107 ntBASIC-1.28□□□□□ -2.61
NKX3-1Q99801 AC005520.4-201ENST00000604337 90 ntBASIC-1.28□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 570.1 ms