Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 U2.18-201ENST00000622185 84 ntBASIC-1.58□□□□□ -2.66
FOXA1P55317 MIR1297-201ENST00000637311 77 ntBASIC-1.58□□□□□ -2.66
FOXA1P55317 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.59□□□□□ -2.66
FOXA1P55317 MIR630-201ENST00000384957 97 ntBASIC-1.59□□□□□ -2.66
FOXA1P55317 RNU6-79P-201ENST00000362511 107 ntBASIC-1.6□□□□□ -2.67
FOXA1P55317 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.6□□□□□ -2.67
FOXA1P55317 MIR548H1-201ENST00000408610 102 ntBASIC-1.6□□□□□ -2.67
FOXA1P55317 RNA5SP215-201ENST00000363440 122 ntBASIC-1.61□□□□□ -2.67
FOXA1P55317 RNU6-668P-201ENST00000364180 107 ntBASIC-1.61□□□□□ -2.67
FOXA1P55317 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.61□□□□□ -2.67
FOXA1P55317 RNY4P18-201ENST00000391107 89 ntBASIC-1.61□□□□□ -2.67
FOXA1P55317 AC006160.2-201ENST00000637708 154 ntBASIC-1.61□□□□□ -2.67
FOXA1P55317 RNU6-675P-201ENST00000384236 104 ntBASIC-1.62□□□□□ -2.67
FOXA1P55317 SNORD113-2-201ENST00000391082 72 ntBASIC-1.62□□□□□ -2.67
FOXA1P55317 RNU6-380P-201ENST00000410207 107 ntBASIC-1.62□□□□□ -2.67
FOXA1P55317 MIR8053-201ENST00000613344 75 ntBASIC-1.62□□□□□ -2.67
FOXA1P55317 SNORD113.1-201ENST00000363280 73 ntBASIC-1.63□□□□□ -2.67
FOXA1P55317 MIR488-201ENST00000365739 83 ntBASIC-1.63□□□□□ -2.67
FOXA1P55317 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.63□□□□□ -2.67
FOXA1P55317 RNU6-313P-201ENST00000516317 112 ntBASIC-1.63□□□□□ -2.67
FOXA1P55317 MIR23C-201ENST00000579846 100 ntBASIC-1.63□□□□□ -2.67
FOXA1P55317 MIR3668-201ENST00000582138 75 ntBASIC-1.63□□□□□ -2.67
FOXA1P55317 SNORD18.1-201ENST00000363807 70 ntBASIC-1.64□□□□□ -2.67
FOXA1P55317 SNORD116-16-201ENST00000384533 92 ntBASIC-1.64□□□□□ -2.67
FOXA1P55317 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.64□□□□□ -2.67
FOXA1P55317 RNU6-983P-201ENST00000516004 103 ntBASIC-1.64□□□□□ -2.67
FOXA1P55317 MIR548AA1-201ENST00000384971 97 ntBASIC-1.65□□□□□ -2.67
FOXA1P55317 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.65□□□□□ -2.67
FOXA1P55317 MIR3170-201ENST00000582699 77 ntBASIC-1.65□□□□□ -2.67
FOXA1P55317 RNU6-640P-201ENST00000363693 105 ntBASIC-1.66□□□□□ -2.68
FOXA1P55317 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.66□□□□□ -2.68
FOXA1P55317 SNORD45A-201ENST00000384512 84 ntBASIC-1.66□□□□□ -2.68
FOXA1P55317 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.66□□□□□ -2.68
FOXA1P55317 RNU6-844P-201ENST00000517175 102 ntBASIC-1.66□□□□□ -2.68
FOXA1P55317 MIR3671-201ENST00000580455 88 ntBASIC-1.66□□□□□ -2.68
FOXA1P55317 RNA5SP173-201ENST00000364857 136 ntBASIC-1.67□□□□□ -2.68
FOXA1P55317 MIR548M-201ENST00000408260 86 ntBASIC-1.67□□□□□ -2.68
FOXA1P55317 MIR664A-201ENST00000626086 82 ntBASIC-1.67□□□□□ -2.68
FOXA1P55317 SNORA63.4-201ENST00000362763 126 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 RNU6-755P-201ENST00000364400 103 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 RNU6-32P-201ENST00000383948 107 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 RNU6-13P-201ENST00000384248 107 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 RNU6-12P-201ENST00000384604 107 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 RNU6-41P-201ENST00000384741 107 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.68□□□□□ -2.68
FOXA1P55317 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.69□□□□□ -2.68
FOXA1P55317 RNU6-247P-201ENST00000362636 107 ntBASIC-1.69□□□□□ -2.68
FOXA1P55317 SNORA41B-201ENST00000384785 128 ntBASIC-1.69□□□□□ -2.68
FOXA1P55317 MIR487B-201ENST00000385021 84 ntBASIC-1.69□□□□□ -2.68
FOXA1P55317 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.69□□□□□ -2.68
FOXA1P55317 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.69□□□□□ -2.68
FOXA1P55317 RNU6-315P-201ENST00000362666 107 ntBASIC-1.7□□□□□ -2.68
FOXA1P55317 SNORD1B-201ENST00000363091 84 ntBASIC-1.7□□□□□ -2.68
FOXA1P55317 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.7□□□□□ -2.68
FOXA1P55317 AC120024.2-201ENST00000576526 175 ntBASIC-1.7□□□□□ -2.68
FOXA1P55317 MT-TR-201ENST00000387439 65 ntBASIC-1.71□□□□□ -2.68
FOXA1P55317 RNU6-228P-201ENST00000362700 106 ntBASIC-1.72□□□□□ -2.68
FOXA1P55317 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.72□□□□□ -2.68
FOXA1P55317 RNU6-695P-201ENST00000391157 104 ntBASIC-1.72□□□□□ -2.68
FOXA1P55317 RNU6-563P-201ENST00000364872 108 ntBASIC-1.73□□□□□ -2.69
FOXA1P55317 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.73□□□□□ -2.69
FOXA1P55317 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.73□□□□□ -2.69
FOXA1P55317 RNU6-258P-201ENST00000390884 101 ntBASIC-1.73□□□□□ -2.69
FOXA1P55317 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.73□□□□□ -2.69
FOXA1P55317 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.73□□□□□ -2.69
FOXA1P55317 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.74□□□□□ -2.69
FOXA1P55317 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.74□□□□□ -2.69
FOXA1P55317 RNU6-147P-201ENST00000383983 107 ntBASIC-1.74□□□□□ -2.69
FOXA1P55317 RNU6-995P-201ENST00000391244 107 ntBASIC-1.74□□□□□ -2.69
FOXA1P55317 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.74□□□□□ -2.69
FOXA1P55317 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.75□□□□□ -2.69
FOXA1P55317 AC108019.1-201ENST00000512540 175 ntBASIC-1.75□□□□□ -2.69
FOXA1P55317 IGLL4P-201ENST00000614590 133 ntBASIC-1.75□□□□□ -2.69
FOXA1P55317 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 RNY1P1-201ENST00000364372 112 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 RNU6-119P-201ENST00000364882 107 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 RNU7-151P-201ENST00000516930 53 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 MIR3910-1-201ENST00000580936 111 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 MIR5588-201ENST00000581890 63 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.76□□□□□ -2.69
FOXA1P55317 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.77□□□□□ -2.69
FOXA1P55317 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.77□□□□□ -2.69
FOXA1P55317 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.77□□□□□ -2.69
FOXA1P55317 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.78□□□□□ -2.69
FOXA1P55317 MIR579-201ENST00000385221 98 ntBASIC-1.78□□□□□ -2.69
FOXA1P55317 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.78□□□□□ -2.69
FOXA1P55317 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.79□□□□□ -2.7
FOXA1P55317 RNU6-895P-201ENST00000384125 103 ntBASIC-1.79□□□□□ -2.7
FOXA1P55317 SNORD116-24-201ENST00000384549 92 ntBASIC-1.79□□□□□ -2.7
FOXA1P55317 MIR154-201ENST00000385243 84 ntBASIC-1.79□□□□□ -2.7
FOXA1P55317 RNU6-172P-201ENST00000411000 93 ntBASIC-1.79□□□□□ -2.7
FOXA1P55317 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.79□□□□□ -2.7
FOXA1P55317 SNORA27.2-201ENST00000363365 126 ntBASIC-1.8□□□□□ -2.7
FOXA1P55317 RNU6-979P-201ENST00000383896 107 ntBASIC-1.8□□□□□ -2.7
FOXA1P55317 SNORD63.2-201ENST00000516303 64 ntBASIC-1.8□□□□□ -2.7
FOXA1P55317 RNU6-70P-201ENST00000516438 60 ntBASIC-1.8□□□□□ -2.7
FOXA1P55317 MIR664B-201ENST00000626756 61 ntBASIC-1.8□□□□□ -2.7
FOXA1P55317 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.81□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 180.8 ms