Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL606753.1-201ENST00000427435 87 ntBASIC-1.6□□□□□ -2.67
VPS28Q9UK41 RNU6-303P-201ENST00000517091 106 ntBASIC-1.6□□□□□ -2.67
VPS28Q9UK41 RNU6-497P-201ENST00000365316 104 ntBASIC-1.61□□□□□ -2.67
VPS28Q9UK41 SNX3P1X-201ENST00000414887 175 ntBASIC-1.61□□□□□ -2.67
VPS28Q9UK41 AC138207.3-201ENST00000585289 166 ntBASIC-1.61□□□□□ -2.67
VPS28Q9UK41 HLA-S-202ENST00000425174 53 ntBASIC-1.62□□□□□ -2.67
VPS28Q9UK41 RNA5SP180-201ENST00000516181 101 ntBASIC-1.62□□□□□ -2.67
VPS28Q9UK41 RNU6-267P-201ENST00000516714 103 ntBASIC-1.62□□□□□ -2.67
VPS28Q9UK41 RNU6-645P-201ENST00000364649 106 ntBASIC-1.63□□□□□ -2.67
VPS28Q9UK41 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.63□□□□□ -2.67
VPS28Q9UK41 RNU6-807P-201ENST00000516805 107 ntBASIC-1.63□□□□□ -2.67
VPS28Q9UK41 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 RNU6-686P-201ENST00000364839 107 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 SNORA26.4-201ENST00000391188 123 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 MIR3675-201ENST00000583661 73 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 U2.7-201ENST00000619197 100 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 SNORD115-33-201ENST00000363723 82 ntBASIC-1.65□□□□□ -2.67
VPS28Q9UK41 RNU6-226P-201ENST00000363778 107 ntBASIC-1.65□□□□□ -2.67
VPS28Q9UK41 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.65□□□□□ -2.67
VPS28Q9UK41 SNORA63.4-201ENST00000362763 126 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 SNORA8.1-201ENST00000384250 140 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 RNU6-919P-201ENST00000516731 104 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 RNU6-640P-201ENST00000363693 105 ntBASIC-1.67□□□□□ -2.68
VPS28Q9UK41 MIR488-201ENST00000365739 83 ntBASIC-1.67□□□□□ -2.68
VPS28Q9UK41 RNU6-215P-201ENST00000365169 102 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 RNU6-147P-201ENST00000383983 107 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 RNU6-129P-201ENST00000391022 107 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 RNU6-789P-201ENST00000517105 102 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 MIR548C-201ENST00000384815 97 ntBASIC-1.69□□□□□ -2.68
VPS28Q9UK41 RNU6-675P-201ENST00000384236 104 ntBASIC-1.7□□□□□ -2.68
VPS28Q9UK41 RNU6-844P-201ENST00000517175 102 ntBASIC-1.7□□□□□ -2.68
VPS28Q9UK41 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.7□□□□□ -2.68
VPS28Q9UK41 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 RNU6-330P-201ENST00000363015 107 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 AC074348.1-201ENST00000426503 132 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 SNORD63.1-201ENST00000516178 80 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 MIR5591-201ENST00000578248 65 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 MIR1246-201ENST00000636535 73 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 SNORD20-201ENST00000384550 80 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 MIR8485-201ENST00000401372 91 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 RNU6-380P-201ENST00000410207 107 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 AC006160.2-201ENST00000637708 154 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 MIR1285-2-201ENST00000408311 88 ntBASIC-1.73□□□□□ -2.69
VPS28Q9UK41 RNU6-478P-201ENST00000363904 110 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 RNU6-604P-201ENST00000390917 100 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 AL353691.2-201ENST00000443795 59 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 MIR1297-201ENST00000637311 77 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.75□□□□□ -2.69
VPS28Q9UK41 MIR198-201ENST00000637333 62 ntBASIC-1.75□□□□□ -2.69
VPS28Q9UK41 MIR601-201ENST00000385256 79 ntBASIC-1.76□□□□□ -2.69
VPS28Q9UK41 RNU7-134P-201ENST00000458997 64 ntBASIC-1.76□□□□□ -2.69
VPS28Q9UK41 RNU6-732P-201ENST00000516033 103 ntBASIC-1.76□□□□□ -2.69
VPS28Q9UK41 SNORD45.1-201ENST00000363181 77 ntBASIC-1.78□□□□□ -2.69
VPS28Q9UK41 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.78□□□□□ -2.69
VPS28Q9UK41 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 MIR1468-201ENST00000410600 86 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 MIR4770-201ENST00000579149 58 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 MIR548AG1-201ENST00000579932 66 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 SNORD115-22-201ENST00000364456 82 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 RNU6-246P-201ENST00000384702 107 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 MIR29B1-201ENST00000385015 81 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 RNU7-88P-201ENST00000458752 63 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 RNU7-174P-201ENST00000516248 59 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 U7.5-201ENST00000517224 61 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 MIR548AI-201ENST00000579940 88 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 MIR4441-201ENST00000582623 100 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 MIR365A-201ENST00000362260 87 ntBASIC-1.82□□□□□ -2.7
VPS28Q9UK41 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.82□□□□□ -2.7
VPS28Q9UK41 RNU6-406P-201ENST00000516470 107 ntBASIC-1.82□□□□□ -2.7
VPS28Q9UK41 RNU6-982P-201ENST00000516216 102 ntBASIC-1.83□□□□□ -2.7
VPS28Q9UK41 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.83□□□□□ -2.7
VPS28Q9UK41 MIR4484-201ENST00000582855 83 ntBASIC-1.83□□□□□ -2.7
VPS28Q9UK41 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.84□□□□□ -2.7
VPS28Q9UK41 IGLL4P-201ENST00000614590 133 ntBASIC-1.84□□□□□ -2.7
VPS28Q9UK41 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 RNU6-540P-201ENST00000384622 101 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 MIR889-201ENST00000401280 79 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 MTND4LP1-201ENST00000446263 157 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 RNU6-168P-201ENST00000516189 101 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 MIR429-201ENST00000362106 83 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 RNU6-44P-201ENST00000384045 107 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.86□□□□□ -2.71
VPS28Q9UK41 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 MIR4520-1-201ENST00000582609 70 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 RNU6-315P-201ENST00000362666 107 ntBASIC-1.87□□□□□ -2.71
VPS28Q9UK41 RNU4-61P-201ENST00000411243 107 ntBASIC-1.87□□□□□ -2.71
VPS28Q9UK41 MIR8053-201ENST00000613344 75 ntBASIC-1.87□□□□□ -2.71
VPS28Q9UK41 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 RNY1P1-201ENST00000364372 112 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 MIR4490-201ENST00000582647 84 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 MIR6818-201ENST00000621576 65 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.88□□□□□ -2.71
VPS28Q9UK41 RNU6-458P-201ENST00000384179 107 ntBASIC-1.89□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 255.9 ms