Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU7-121P-201ENST00000516604 62 ntBASIC-4.21□□□□□ -3.08
SCAPERQ9BY12 SNORD77.2-201ENST00000391045 68 ntBASIC-4.22□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.139-201ENST00000363464 102 ntBASIC-4.23□□□□□ -3.09
SCAPERQ9BY12 RNU6-639P-201ENST00000384074 107 ntBASIC-4.23□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.632-201ENST00000459189 102 ntBASIC-4.23□□□□□ -3.09
SCAPERQ9BY12 SNORD19B-201ENST00000459623 84 ntBASIC-4.23□□□□□ -3.09
SCAPERQ9BY12 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-4.23□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.11-201ENST00000362375 109 ntBASIC-4.24□□□□□ -3.09
SCAPERQ9BY12 RNU6-915P-201ENST00000364943 103 ntBASIC-4.24□□□□□ -3.09
SCAPERQ9BY12 RNU6-982P-201ENST00000516216 102 ntBASIC-4.24□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.160-201ENST00000363677 92 ntBASIC-4.25□□□□□ -3.09
SCAPERQ9BY12 RNU6-1047P-201ENST00000364418 107 ntBASIC-4.25□□□□□ -3.09
SCAPERQ9BY12 SNORA41B-201ENST00000384785 128 ntBASIC-4.25□□□□□ -3.09
SCAPERQ9BY12 RNU6-781P-201ENST00000516377 101 ntBASIC-4.25□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.29-201ENST00000362570 113 ntBASIC-4.26□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.264-201ENST00000364665 102 ntBASIC-4.26□□□□□ -3.09
SCAPERQ9BY12 RNU6-737P-201ENST00000365370 107 ntBASIC-4.26□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.129-201ENST00000363392 110 ntBASIC-4.27□□□□□ -3.09
SCAPERQ9BY12 RNU6-972P-201ENST00000391208 107 ntBASIC-4.27□□□□□ -3.09
SCAPERQ9BY12 RNU6-172P-201ENST00000411000 93 ntBASIC-4.27□□□□□ -3.09
SCAPERQ9BY12 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-4.27□□□□□ -3.09
SCAPERQ9BY12 MIR4679-2-201ENST00000578358 77 ntBASIC-4.27□□□□□ -3.09
SCAPERQ9BY12 Y_RNA.277-201ENST00000364754 102 ntBASIC-4.28□□□□□ -3.09
SCAPERQ9BY12 MIR3675-201ENST00000583661 73 ntBASIC-4.28□□□□□ -3.09
SCAPERQ9BY12 RNA5SP215-201ENST00000363440 122 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 RNU4-11P-201ENST00000365287 132 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 RNU7-153P-201ENST00000516455 62 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 Y_RNA.705-201ENST00000516862 110 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 MIR1302-1-201ENST00000637932 143 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 RNU6-129P-201ENST00000391022 107 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 Y_RNA.717-201ENST00000517106 92 ntBASIC-4.29□□□□□ -3.1
SCAPERQ9BY12 Y_RNA.626-201ENST00000411288 95 ntBASIC-4.3□□□□□ -3.1
SCAPERQ9BY12 AL158147.1-201ENST00000443970 75 ntBASIC-4.3□□□□□ -3.1
SCAPERQ9BY12 RNU6-718P-201ENST00000516166 105 ntBASIC-4.3□□□□□ -3.1
SCAPERQ9BY12 RNA5SP173-201ENST00000364857 136 ntBASIC-4.31□□□□□ -3.1
SCAPERQ9BY12 Y_RNA.516-201ENST00000384541 124 ntBASIC-4.31□□□□□ -3.1
SCAPERQ9BY12 RNU6-795P-201ENST00000516323 103 ntBASIC-4.31□□□□□ -3.1
SCAPERQ9BY12 RNU6-460P-201ENST00000391158 108 ntBASIC-4.33□□□□□ -3.1
SCAPERQ9BY12 Y_RNA.609-201ENST00000410669 89 ntBASIC-4.33□□□□□ -3.1
SCAPERQ9BY12 RNU6-918P-201ENST00000391219 106 ntBASIC-4.34□□□□□ -3.1
SCAPERQ9BY12 RNU6-887P-201ENST00000410660 100 ntBASIC-4.34□□□□□ -3.1
SCAPERQ9BY12 MTND4LP1-201ENST00000446263 157 ntBASIC-4.34□□□□□ -3.1
SCAPERQ9BY12 RNU7-197P-201ENST00000458836 62 ntBASIC-4.34□□□□□ -3.1
SCAPERQ9BY12 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-4.34□□□□□ -3.1
SCAPERQ9BY12 Y_RNA.320-201ENST00000365144 102 ntBASIC-4.35□□□□□ -3.11
SCAPERQ9BY12 SNORD116-4-201ENST00000384733 96 ntBASIC-4.35□□□□□ -3.11
SCAPERQ9BY12 RNU6-604P-201ENST00000390917 100 ntBASIC-4.35□□□□□ -3.11
SCAPERQ9BY12 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-4.35□□□□□ -3.11
SCAPERQ9BY12 Y_RNA.158-201ENST00000363651 101 ntBASIC-4.36□□□□□ -3.11
SCAPERQ9BY12 RNU6-537P-201ENST00000517277 103 ntBASIC-4.36□□□□□ -3.11
SCAPERQ9BY12 AC113195.1-201ENST00000579952 141 ntBASIC-4.36□□□□□ -3.11
SCAPERQ9BY12 Y_RNA.70-201ENST00000362886 110 ntBASIC-4.37□□□□□ -3.11
SCAPERQ9BY12 SNORD45.1-201ENST00000363181 77 ntBASIC-4.37□□□□□ -3.11
SCAPERQ9BY12 AL035470.1-201ENST00000622571 220 ntBASIC-4.37□□□□□ -3.11
SCAPERQ9BY12 MIR548F1-201ENST00000408667 84 ntBASIC-4.38□□□□□ -3.11
SCAPERQ9BY12 MIR5009-201ENST00000578736 100 ntBASIC-4.38□□□□□ -3.11
SCAPERQ9BY12 Y_RNA.96-201ENST00000363092 109 ntBASIC-4.38□□□□□ -3.11
SCAPERQ9BY12 SNORD116-10-201ENST00000363791 102 ntBASIC-4.38□□□□□ -3.11
SCAPERQ9BY12 SNORD115-45-201ENST00000391078 81 ntBASIC-4.38□□□□□ -3.11
SCAPERQ9BY12 RNU6-1108P-201ENST00000516308 104 ntBASIC-4.38□□□□□ -3.11
SCAPERQ9BY12 Y_RNA.58-201ENST00000362807 102 ntBASIC-4.39□□□□□ -3.11
SCAPERQ9BY12 MTND2P23-201ENST00000422990 651 ntBASIC-4.39□□□□□ -3.11
SCAPERQ9BY12 RNU6-590P-201ENST00000365039 107 ntBASIC-4.4□□□□□ -3.11
SCAPERQ9BY12 MT-TL1-201ENST00000386347 75 ntBASIC-4.4□□□□□ -3.11
SCAPERQ9BY12 Y_RNA.579-201ENST00000390939 94 ntBASIC-4.4□□□□□ -3.11
SCAPERQ9BY12 RNU7-160P-201ENST00000516660 62 ntBASIC-4.4□□□□□ -3.11
SCAPERQ9BY12 RNU6-330P-201ENST00000363015 107 ntBASIC-4.41□□□□□ -3.12
SCAPERQ9BY12 RNU6-1169P-201ENST00000363537 103 ntBASIC-4.41□□□□□ -3.12
SCAPERQ9BY12 RNU6-665P-201ENST00000384639 107 ntBASIC-4.41□□□□□ -3.12
SCAPERQ9BY12 RNU6-988P-201ENST00000519081 107 ntBASIC-4.41□□□□□ -3.12
SCAPERQ9BY12 AP001340.1-201ENST00000624405 217 ntBASIC-4.41□□□□□ -3.12
SCAPERQ9BY12 Y_RNA.194-201ENST00000363985 102 ntBASIC-4.42□□□□□ -3.12
SCAPERQ9BY12 RNU6-300P-201ENST00000459080 104 ntBASIC-4.43□□□□□ -3.12
SCAPERQ9BY12 RNU6-182P-201ENST00000516970 105 ntBASIC-4.43□□□□□ -3.12
SCAPERQ9BY12 U6.104-201ENST00000637979 90 ntBASIC-4.43□□□□□ -3.12
SCAPERQ9BY12 RNU6-554P-201ENST00000410466 106 ntBASIC-4.44□□□□□ -3.12
SCAPERQ9BY12 Y_RNA.649-201ENST00000459077 103 ntBASIC-4.44□□□□□ -3.12
SCAPERQ9BY12 RNU6-176P-201ENST00000517196 105 ntBASIC-4.44□□□□□ -3.12
SCAPERQ9BY12 SNORD58C-201ENST00000365223 64 ntBASIC-4.45□□□□□ -3.12
SCAPERQ9BY12 RNU6-876P-201ENST00000391295 104 ntBASIC-4.45□□□□□ -3.12
SCAPERQ9BY12 RNU6-1161P-201ENST00000516176 102 ntBASIC-4.45□□□□□ -3.12
SCAPERQ9BY12 MIR4426-201ENST00000640330 63 ntBASIC-4.45□□□□□ -3.12
SCAPERQ9BY12 Y_RNA.69-201ENST00000362885 109 ntBASIC-4.46□□□□□ -3.12
SCAPERQ9BY12 Y_RNA.137-201ENST00000363455 112 ntBASIC-4.46□□□□□ -3.12
SCAPERQ9BY12 RNU6-1219P-201ENST00000516143 112 ntBASIC-4.46□□□□□ -3.12
SCAPERQ9BY12 Y_RNA.688-201ENST00000516565 95 ntBASIC-4.46□□□□□ -3.12
SCAPERQ9BY12 SNORA8.1-201ENST00000384250 140 ntBASIC-4.47□□□□□ -3.13
SCAPERQ9BY12 RNU6-713P-201ENST00000384761 107 ntBASIC-4.47□□□□□ -3.13
SCAPERQ9BY12 RNU6-1061P-201ENST00000516530 99 ntBASIC-4.48□□□□□ -3.13
SCAPERQ9BY12 AC139792.2-201ENST00000624218 587 ntBASIC-4.49□□□□□ -3.13
SCAPERQ9BY12 Y_RNA.240-201ENST00000364469 95 ntBASIC-4.5□□□□□ -3.13
SCAPERQ9BY12 SCARNA23-201ENST00000516060 130 ntBASIC-4.51□□□□□ -3.13
SCAPERQ9BY12 RNU6-1128P-201ENST00000362825 109 ntBASIC-4.52□□□□□ -3.13
SCAPERQ9BY12 MIR519C-201ENST00000385053 87 ntBASIC-4.52□□□□□ -3.13
SCAPERQ9BY12 RNU6-303P-201ENST00000517091 106 ntBASIC-4.52□□□□□ -3.13
SCAPERQ9BY12 MIR124-1-201ENST00000385275 85 ntBASIC-4.53□□□□□ -3.13
SCAPERQ9BY12 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-4.53□□□□□ -3.13
SCAPERQ9BY12 RNU6-1296P-201ENST00000383879 107 ntBASIC-4.54□□□□□ -3.14
SCAPERQ9BY12 RNU6-1227P-201ENST00000383981 107 ntBASIC-4.55□□□□□ -3.14
SCAPERQ9BY12 U7.2-201ENST00000607576 63 ntBASIC-4.55□□□□□ -3.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms