Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 AC244250.2-201ENST00000418731 148 ntBASIC-0.11□□□□□ -2.43
SOX9P48436 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.11□□□□□ -2.43
SOX9P48436 SNORA32.1-201ENST00000364514 115 ntBASIC-0.12□□□□□ -2.43
SOX9P48436 SNORD114-12-201ENST00000365400 75 ntBASIC-0.12□□□□□ -2.43
SOX9P48436 AL021921.1-201ENST00000442774 93 ntBASIC-0.12□□□□□ -2.43
SOX9P48436 MIR4645-201ENST00000583158 77 ntBASIC-0.12□□□□□ -2.43
SOX9P48436 AC090617.8-201ENST00000623339 167 ntBASIC-0.12□□□□□ -2.43
SOX9P48436 MIR9-2-201ENST00000384838 87 ntBASIC-0.13□□□□□ -2.43
SOX9P48436 MIR4263-201ENST00000584745 83 ntBASIC-0.13□□□□□ -2.43
SOX9P48436 uc_338.36-201ENST00000622331 158 ntBASIC-0.13□□□□□ -2.43
SOX9P48436 MIR101-1-201ENST00000362265 75 ntBASIC-0.14□□□□□ -2.43
SOX9P48436 RNU7-55P-201ENST00000459426 62 ntBASIC-0.14□□□□□ -2.43
SOX9P48436 RNA5SP67-201ENST00000516422 131 ntBASIC-0.14□□□□□ -2.43
SOX9P48436 AL391099.1-201ENST00000624635 187 ntBASIC-0.14□□□□□ -2.43
SOX9P48436 SNORA18.1-201ENST00000363418 128 ntBASIC-0.15□□□□□ -2.43
SOX9P48436 RNU6-663P-201ENST00000391105 106 ntBASIC-0.15□□□□□ -2.43
SOX9P48436 SNORD30.1-201ENST00000391309 70 ntBASIC-0.15□□□□□ -2.43
SOX9P48436 RNU6-518P-201ENST00000516056 96 ntBASIC-0.15□□□□□ -2.43
SOX9P48436 RNU6-523P-201ENST00000516304 54 ntBASIC-0.15□□□□□ -2.43
SOX9P48436 U2.7-201ENST00000619197 100 ntBASIC-0.15□□□□□ -2.43
SOX9P48436 SNORD95.1-201ENST00000364099 68 ntBASIC-0.16□□□□□ -2.44
SOX9P48436 MIR4432-201ENST00000581823 84 ntBASIC-0.16□□□□□ -2.44
SOX9P48436 RNA5SP215-201ENST00000363440 122 ntBASIC-0.17□□□□□ -2.44
SOX9P48436 RNU6-973P-201ENST00000364690 107 ntBASIC-0.17□□□□□ -2.44
SOX9P48436 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.17□□□□□ -2.44
SOX9P48436 RNU6-649P-201ENST00000384463 107 ntBASIC-0.18□□□□□ -2.44
SOX9P48436 MIR409-201ENST00000362237 79 ntBASIC-0.19□□□□□ -2.44
SOX9P48436 SNORD114-28-201ENST00000363610 72 ntBASIC-0.19□□□□□ -2.44
SOX9P48436 RNU6-540P-201ENST00000384622 101 ntBASIC-0.19□□□□□ -2.44
SOX9P48436 MIR517B-201ENST00000385102 67 ntBASIC-0.19□□□□□ -2.44
SOX9P48436 RPS29P8-201ENST00000445109 171 ntBASIC-0.21□□□□□ -2.44
SOX9P48436 SNORD4A-201ENST00000459174 72 ntBASIC-0.21□□□□□ -2.44
SOX9P48436 RNU7-154P-201ENST00000516194 62 ntBASIC-0.21□□□□□ -2.44
SOX9P48436 SNORD115-23-201ENST00000364461 82 ntBASIC-0.22□□□□□ -2.44
SOX9P48436 SNORD116-24-201ENST00000384549 92 ntBASIC-0.22□□□□□ -2.44
SOX9P48436 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.22□□□□□ -2.44
SOX9P48436 MIR548V-201ENST00000584165 80 ntBASIC-0.22□□□□□ -2.44
SOX9P48436 MIR3666-201ENST00000607845 111 ntBASIC-0.22□□□□□ -2.44
SOX9P48436 MIR655-201ENST00000362159 97 ntBASIC-0.23□□□□□ -2.45
SOX9P48436 RNA5SP451-201ENST00000410588 110 ntBASIC-0.23□□□□□ -2.45
SOX9P48436 AL445193.1-201ENST00000441183 141 ntBASIC-0.23□□□□□ -2.45
SOX9P48436 AL353803.5-201ENST00000599815 141 ntBASIC-0.23□□□□□ -2.45
SOX9P48436 SNORA62.4-201ENST00000365504 151 ntBASIC-0.24□□□□□ -2.45
SOX9P48436 MIR519A2-201ENST00000384990 87 ntBASIC-0.24□□□□□ -2.45
SOX9P48436 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.25□□□□□ -2.45
SOX9P48436 RNU6-630P-201ENST00000391258 106 ntBASIC-0.25□□□□□ -2.45
SOX9P48436 AC096531.1-201ENST00000419107 107 ntBASIC-0.25□□□□□ -2.45
SOX9P48436 RNU6-539P-201ENST00000516665 103 ntBASIC-0.25□□□□□ -2.45
SOX9P48436 MIR8064-201ENST00000612863 90 ntBASIC-0.25□□□□□ -2.45
SOX9P48436 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.25□□□□□ -2.45
SOX9P48436 MIR224-201ENST00000384889 81 ntBASIC-0.26□□□□□ -2.45
SOX9P48436 RNA5SP266-201ENST00000410273 108 ntBASIC-0.26□□□□□ -2.45
SOX9P48436 RNU7-174P-201ENST00000516248 59 ntBASIC-0.26□□□□□ -2.45
SOX9P48436 RNA5SP66-201ENST00000517178 101 ntBASIC-0.26□□□□□ -2.45
SOX9P48436 RNU6-698P-201ENST00000363523 107 ntBASIC-0.27□□□□□ -2.45
SOX9P48436 RNU6-34P-201ENST00000364874 107 ntBASIC-0.27□□□□□ -2.45
SOX9P48436 SNORD113-2-201ENST00000391082 72 ntBASIC-0.28□□□□□ -2.45
SOX9P48436 SNORA25.4-201ENST00000363666 124 ntBASIC-0.29□□□□□ -2.46
SOX9P48436 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.29□□□□□ -2.46
SOX9P48436 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.29□□□□□ -2.46
SOX9P48436 SNORD56B-201ENST00000384713 71 ntBASIC-0.29□□□□□ -2.46
SOX9P48436 RNA5SP300-201ENST00000391197 107 ntBASIC-0.3□□□□□ -2.46
SOX9P48436 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.3□□□□□ -2.46
SOX9P48436 RNU6-542P-201ENST00000516405 103 ntBASIC-0.3□□□□□ -2.46
SOX9P48436 MIR6854-201ENST00000614935 69 ntBASIC-0.3□□□□□ -2.46
SOX9P48436 U6.111-201ENST00000636093 83 ntBASIC-0.3□□□□□ -2.46
SOX9P48436 AC093726.3-201ENST00000637588 150 ntBASIC-0.31□□□□□ -2.46
SOX9P48436 MIR4788-201ENST00000639104 80 ntBASIC-0.31□□□□□ -2.46
SOX9P48436 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.32□□□□□ -2.46
SOX9P48436 MIR630-201ENST00000384957 97 ntBASIC-0.32□□□□□ -2.46
SOX9P48436 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.32□□□□□ -2.46
SOX9P48436 RNU6-320P-201ENST00000516511 106 ntBASIC-0.32□□□□□ -2.46
SOX9P48436 RNA5SP275-201ENST00000363936 118 ntBASIC-0.33□□□□□ -2.46
SOX9P48436 SNORD57-201ENST00000448188 72 ntBASIC-0.33□□□□□ -2.46
SOX9P48436 AC114801.3-201ENST00000510231 177 ntBASIC-0.33□□□□□ -2.46
SOX9P48436 MIR5704-201ENST00000584029 77 ntBASIC-0.33□□□□□ -2.46
SOX9P48436 AL590491.3-201ENST00000610731 82 ntBASIC-0.33□□□□□ -2.46
SOX9P48436 SNORD114-11-201ENST00000363738 75 ntBASIC-0.36□□□□□ -2.47
SOX9P48436 MIR548AX-201ENST00000580117 73 ntBASIC-0.36□□□□□ -2.47
SOX9P48436 MIR429-201ENST00000362106 83 ntBASIC-0.38□□□□□ -2.47
SOX9P48436 MIR204-201ENST00000385200 110 ntBASIC-0.38□□□□□ -2.47
SOX9P48436 MIR4280-201ENST00000582178 76 ntBASIC-0.38□□□□□ -2.47
SOX9P48436 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 SNORD14C-201ENST00000365382 88 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 RNU6-800P-201ENST00000384473 103 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 SNORA32.3-201ENST00000384772 121 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 MIR527-201ENST00000385244 85 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 RNY1P9-201ENST00000532431 109 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 AC005520.4-201ENST00000604337 90 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 MIR6851-201ENST00000617060 67 ntBASIC-0.39□□□□□ -2.47
SOX9P48436 SNORD126-201ENST00000459475 77 ntBASIC-0.4□□□□□ -2.47
SOX9P48436 MIR548AZ-201ENST00000616567 95 ntBASIC-0.4□□□□□ -2.47
SOX9P48436 U4.4-201ENST00000620626 117 ntBASIC-0.4□□□□□ -2.47
SOX9P48436 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.41□□□□□ -2.48
SOX9P48436 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.41□□□□□ -2.48
SOX9P48436 RNU4-63P-201ENST00000411313 118 ntBASIC-0.41□□□□□ -2.48
SOX9P48436 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.41□□□□□ -2.48
SOX9P48436 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.42□□□□□ -2.48
SOX9P48436 SNORD38.3-201ENST00000516599 73 ntBASIC-0.42□□□□□ -2.48
SOX9P48436 MIR1468-201ENST00000410600 86 ntBASIC-0.43□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 253.1 ms