Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 RNU6-337P-201ENST00000391243 106 ntBASIC0.47□□□□□ -2.33
SLC44A4Q53GD3 SCARNA21.1-201ENST00000515996 128 ntBASIC0.47□□□□□ -2.33
SLC44A4Q53GD3 RNU7-174P-201ENST00000516248 59 ntBASIC0.47□□□□□ -2.33
SLC44A4Q53GD3 MIR548V-201ENST00000584165 80 ntBASIC0.47□□□□□ -2.33
SLC44A4Q53GD3 AC103706.3-201ENST00000636297 85 ntBASIC0.47□□□□□ -2.33
SLC44A4Q53GD3 MIR499B-201ENST00000636498 73 ntBASIC0.47□□□□□ -2.33
SLC44A4Q53GD3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.46□□□□□ -2.34
SLC44A4Q53GD3 SNORA63.6-201ENST00000364921 119 ntBASIC0.46□□□□□ -2.34
SLC44A4Q53GD3 RNU6-669P-201ENST00000365575 107 ntBASIC0.46□□□□□ -2.34
SLC44A4Q53GD3 MTND4LP1-201ENST00000446263 157 ntBASIC0.46□□□□□ -2.34
SLC44A4Q53GD3 MIR3925-201ENST00000584674 77 ntBASIC0.46□□□□□ -2.34
SLC44A4Q53GD3 MIR2909-201ENST00000617113 69 ntBASIC0.46□□□□□ -2.34
SLC44A4Q53GD3 RNU7-129P-201ENST00000516128 62 ntBASIC0.45□□□□□ -2.34
SLC44A4Q53GD3 RNU6-542P-201ENST00000516405 103 ntBASIC0.45□□□□□ -2.34
SLC44A4Q53GD3 MIR4677-201ENST00000584153 80 ntBASIC0.45□□□□□ -2.34
SLC44A4Q53GD3 RN7SL660P-201ENST00000614852 299 ntBASIC0.45□□□□□ -2.34
SLC44A4Q53GD3 RNU6-829P-201ENST00000363700 112 ntBASIC0.44□□□□□ -2.34
SLC44A4Q53GD3 SNORA25.5-201ENST00000363782 126 ntBASIC0.44□□□□□ -2.34
SLC44A4Q53GD3 RNU7-188P-201ENST00000517063 64 ntBASIC0.44□□□□□ -2.34
SLC44A4Q53GD3 MIR4514-201ENST00000581410 57 ntBASIC0.44□□□□□ -2.34
SLC44A4Q53GD3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 AC090625.1-201ENST00000357130 210 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 RNU6-1079P-201ENST00000362861 110 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 SNORD113-4-201ENST00000364802 75 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 Y_RNA.325-201ENST00000365171 122 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 RNA5SP128-201ENST00000365305 116 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 RNU6-499P-201ENST00000365615 107 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 AC079150.2-201ENST00000443733 78 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 SNORA62.5-201ENST00000516634 120 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 CYP3A54P-201ENST00000566950 75 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 U7.6-201ENST00000610841 64 ntBASIC0.43□□□□□ -2.34
SLC44A4Q53GD3 SNORD60.1-201ENST00000362451 73 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNA5SP62-201ENST00000363457 110 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 Y_RNA.250-201ENST00000364542 110 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNU6-1162P-201ENST00000384443 104 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 SNORA41B-201ENST00000384785 128 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 MIR548C-201ENST00000384815 97 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNU6-848P-201ENST00000515948 107 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNU6-617P-201ENST00000516147 107 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNU6-473P-201ENST00000516164 107 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNU6-1049P-201ENST00000516414 107 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 MIR466-201ENST00000580653 84 ntBASIC0.42□□□□□ -2.34
SLC44A4Q53GD3 RNA5SP215-201ENST00000363440 122 ntBASIC0.41□□□□□ -2.34
SLC44A4Q53GD3 MIR548AD-201ENST00000584780 82 ntBASIC0.41□□□□□ -2.34
SLC44A4Q53GD3 AC084368.1-201ENST00000620935 65 ntBASIC0.41□□□□□ -2.34
SLC44A4Q53GD3 SNORA9.1-201ENST00000362412 131 ntBASIC0.4□□□□□ -2.35
SLC44A4Q53GD3 RNU6-815P-201ENST00000384080 113 ntBASIC0.4□□□□□ -2.35
SLC44A4Q53GD3 SNORD113-2-201ENST00000391082 72 ntBASIC0.4□□□□□ -2.35
SLC44A4Q53GD3 MIR20A-201ENST00000362279 71 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 RNU6-698P-201ENST00000363523 107 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 Y_RNA.236-201ENST00000364427 111 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 RNU6-34P-201ENST00000364874 107 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 SNORA15B-2-201ENST00000384058 135 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 SNORA15B-1-201ENST00000384334 135 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 MIR519A2-201ENST00000384990 87 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 MTND4LP19-201ENST00000403051 166 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 MIR1255B2-201ENST00000408618 67 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 AC244090.1-201ENST00000441884 93 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 MIR6773-201ENST00000612812 74 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 U6.96-201ENST00000636425 70 ntBASIC0.39□□□□□ -2.35
SLC44A4Q53GD3 RNU6-502P-201ENST00000362419 108 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 RNU6-1036P-201ENST00000383959 104 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 MIR517B-201ENST00000385102 67 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 MIR548H2-201ENST00000408874 88 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 RNU6-122P-201ENST00000516818 107 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 RNU6-92P-201ENST00000605893 104 ntBASIC0.38□□□□□ -2.35
SLC44A4Q53GD3 SNORD114-29-201ENST00000364819 70 ntBASIC0.37□□□□□ -2.35
SLC44A4Q53GD3 AC023932.2-201ENST00000603176 175 ntBASIC0.37□□□□□ -2.35
SLC44A4Q53GD3 Y_RNA.246-201ENST00000364495 108 ntBASIC0.36□□□□□ -2.35
SLC44A4Q53GD3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.36□□□□□ -2.35
SLC44A4Q53GD3 MIR876-201ENST00000401147 81 ntBASIC0.36□□□□□ -2.35
SLC44A4Q53GD3 RNU6-518P-201ENST00000516056 96 ntBASIC0.36□□□□□ -2.35
SLC44A4Q53GD3 MIR106A-201ENST00000384870 81 ntBASIC0.35□□□□□ -2.35
SLC44A4Q53GD3 MIRLET7B-201ENST00000385140 83 ntBASIC0.35□□□□□ -2.35
SLC44A4Q53GD3 RNU6-127P-201ENST00000390897 107 ntBASIC0.35□□□□□ -2.35
SLC44A4Q53GD3 SCARNA11.2-201ENST00000517183 154 ntBASIC0.35□□□□□ -2.35
SLC44A4Q53GD3 Y_RNA.282-201ENST00000364793 102 ntBASIC0.34□□□□□ -2.36
SLC44A4Q53GD3 MIR643-201ENST00000385267 97 ntBASIC0.34□□□□□ -2.36
SLC44A4Q53GD3 MIR3938-201ENST00000582157 103 ntBASIC0.34□□□□□ -2.36
SLC44A4Q53GD3 SNORD115-25-201ENST00000362619 82 ntBASIC0.33□□□□□ -2.36
SLC44A4Q53GD3 RNU6-940P-201ENST00000363433 104 ntBASIC0.33□□□□□ -2.36
SLC44A4Q53GD3 AC108740.1-201ENST00000498629 225 ntBASIC0.33□□□□□ -2.36
SLC44A4Q53GD3 RNU6-782P-201ENST00000516852 104 ntBASIC0.33□□□□□ -2.36
SLC44A4Q53GD3 AC069113.3-201ENST00000521019 150 ntBASIC0.33□□□□□ -2.36
SLC44A4Q53GD3 MIR7978-201ENST00000636158 59 ntBASIC0.33□□□□□ -2.36
SLC44A4Q53GD3 RNU6-987P-201ENST00000384759 104 ntBASIC0.32□□□□□ -2.36
SLC44A4Q53GD3 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
SLC44A4Q53GD3 Y_RNA.698-201ENST00000516798 118 ntBASIC0.32□□□□□ -2.36
SLC44A4Q53GD3 Y_RNA.74-201ENST00000362911 99 ntBASIC0.31□□□□□ -2.36
SLC44A4Q53GD3 SNORD115-23-201ENST00000364461 82 ntBASIC0.31□□□□□ -2.36
SLC44A4Q53GD3 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.31□□□□□ -2.36
SLC44A4Q53GD3 RNU4-37P-201ENST00000410214 84 ntBASIC0.31□□□□□ -2.36
SLC44A4Q53GD3 RNU6-1312P-201ENST00000362425 108 ntBASIC0.3□□□□□ -2.36
SLC44A4Q53GD3 Y_RNA.109-201ENST00000363215 102 ntBASIC0.3□□□□□ -2.36
SLC44A4Q53GD3 RNU6-302P-201ENST00000365249 107 ntBASIC0.3□□□□□ -2.36
SLC44A4Q53GD3 AL021921.1-201ENST00000442774 93 ntBASIC0.3□□□□□ -2.36
SLC44A4Q53GD3 AP000676.1-201ENST00000533307 52 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 257.8 ms