Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MIR548F4-201ENST00000408515 105 ntBASIC-1.86□□□□□ -2.71
TRAV1-1A0A0B4J248 U2.18-201ENST00000622185 84 ntBASIC-1.86□□□□□ -2.71
TRAV1-1A0A0B4J248 MIR513C-201ENST00000401352 84 ntBASIC-1.87□□□□□ -2.71
TRAV1-1A0A0B4J248 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.87□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.87□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU7-174P-201ENST00000516248 59 ntBASIC-1.87□□□□□ -2.71
TRAV1-1A0A0B4J248 U7.2-201ENST00000607576 63 ntBASIC-1.87□□□□□ -2.71
TRAV1-1A0A0B4J248 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.88□□□□□ -2.71
TRAV1-1A0A0B4J248 MIR548A3-201ENST00000385297 97 ntBASIC-1.88□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.88□□□□□ -2.71
TRAV1-1A0A0B4J248 MIR548AM-201ENST00000584298 74 ntBASIC-1.88□□□□□ -2.71
TRAV1-1A0A0B4J248 MIR664B-201ENST00000626756 61 ntBASIC-1.88□□□□□ -2.71
TRAV1-1A0A0B4J248 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.89□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU6-841P-201ENST00000383872 107 ntBASIC-1.89□□□□□ -2.71
TRAV1-1A0A0B4J248 MIR3144-201ENST00000579460 79 ntBASIC-1.89□□□□□ -2.71
TRAV1-1A0A0B4J248 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU6-258P-201ENST00000390884 101 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU6-772P-201ENST00000516042 105 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 RNU6-861P-201ENST00000516745 106 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 AC072026.1-201ENST00000605023 201 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.9□□□□□ -2.71
TRAV1-1A0A0B4J248 Y_RNA.350-201ENST00000365409 98 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.460-201ENST00000384255 102 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-587P-201ENST00000391282 106 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-887P-201ENST00000410660 100 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-118P-201ENST00000516552 102 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-980P-201ENST00000516925 103 ntBASIC-1.91□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-972P-201ENST00000391208 107 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR1236-201ENST00000408340 102 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.720-201ENST00000517166 92 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR548S-201ENST00000581352 82 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR3170-201ENST00000582699 77 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 U4.4-201ENST00000620626 117 ntBASIC-1.92□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 SNORD116-18-201ENST00000383961 92 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 RNY3P14-201ENST00000384309 102 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.478-201ENST00000384358 107 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU4-88P-201ENST00000411220 86 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR548X2-201ENST00000579776 100 ntBASIC-1.93□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-681P-201ENST00000364012 104 ntBASIC-1.94□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1227P-201ENST00000383981 107 ntBASIC-1.94□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.668-201ENST00000516233 93 ntBASIC-1.94□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR23C-201ENST00000579846 100 ntBASIC-1.94□□□□□ -2.72
TRAV1-1A0A0B4J248 AL157777.2-201ENST00000258070 137 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-682P-201ENST00000363843 106 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR569-201ENST00000385228 96 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 SNORD77.2-201ENST00000391045 68 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 MTCYBP6-201ENST00000441810 138 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1023P-201ENST00000516137 106 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-982P-201ENST00000516216 102 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.95□□□□□ -2.72
TRAV1-1A0A0B4J248 RNY4P7-201ENST00000364600 96 ntBASIC-1.96□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.96□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.96□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-537P-201ENST00000517277 103 ntBASIC-1.96□□□□□ -2.72
TRAV1-1A0A0B4J248 AC013734.1-201ENST00000619329 111 ntBASIC-1.96□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-330P-201ENST00000363015 107 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 SNORD116-10-201ENST00000363791 102 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 SNORA20.1-201ENST00000364790 130 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 RNU6-574P-201ENST00000384265 107 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 SCARNA23-201ENST00000516060 130 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.97□□□□□ -2.72
TRAV1-1A0A0B4J248 MIR429-201ENST00000362106 83 ntBASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.535-201ENST00000384612 99 ntBASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 AL117187.1-201ENST00000555482 181 ntBASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.98□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-766P-201ENST00000362478 107 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 SNORD115-31-201ENST00000365318 82 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU7-107P-201ENST00000459121 61 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU7-61P-201ENST00000515897 61 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-162P-201ENST00000516228 103 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.99□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-247P-201ENST00000362636 107 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-698P-201ENST00000363523 107 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-34P-201ENST00000364874 107 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-604P-201ENST00000390917 100 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-904P-201ENST00000516206 101 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 SNORD33.1-201ENST00000516213 88 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 MIR548V-201ENST00000584165 80 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 AC005520.4-201ENST00000604337 90 ntBASIC-2□□□□□ -2.73
TRAV1-1A0A0B4J248 U6.97-201ENST00000636904 101 ntBASIC-2.01□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.8-201ENST00000362353 102 ntBASIC-2.02□□□□□ -2.73
TRAV1-1A0A0B4J248 RNA5SP93-201ENST00000362525 114 ntBASIC-2.02□□□□□ -2.73
TRAV1-1A0A0B4J248 Y_RNA.149-201ENST00000363558 117 ntBASIC-2.02□□□□□ -2.73
TRAV1-1A0A0B4J248 RNU6-804P-201ENST00000384286 107 ntBASIC-2.02□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms