Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNA5SP255-201ENST00000516370 107 ntBASIC1.33□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 AC011195.1-201ENST00000578177 177 ntBASIC1.33□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR7110-201ENST00000612638 86 ntBASIC1.33□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR409-201ENST00000362237 79 ntBASIC1.32□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR20A-201ENST00000362279 71 ntBASIC1.32□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR527-201ENST00000385244 85 ntBASIC1.32□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR5589-201ENST00000579442 60 ntBASIC1.32□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR7107-201ENST00000611489 80 ntBASIC1.32□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR6759-201ENST00000638110 65 ntBASIC1.32□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 RNU4-38P-201ENST00000364472 129 ntBASIC1.31□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR618-201ENST00000385287 98 ntBASIC1.31□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 SNORD99-201ENST00000408612 74 ntBASIC1.31□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 RNA5SP94-201ENST00000516917 108 ntBASIC1.31□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 RNU4-33P-201ENST00000364316 85 ntBASIC1.3□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.3□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 RNA5SP193-201ENST00000410353 107 ntBASIC1.3□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR5706-201ENST00000579841 80 ntBASIC1.3□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 AC243829.3-201ENST00000622177 108 ntBASIC1.3□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 Y_RNA.282-201ENST00000364793 102 ntBASIC1.29□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR1255B2-201ENST00000408618 67 ntBASIC1.29□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.29□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR6857-201ENST00000613267 93 ntBASIC1.29□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 RNU6-930P-201ENST00000390938 100 ntBASIC1.28□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR548F3-201ENST00000408509 87 ntBASIC1.28□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 SNORA40.16-201ENST00000517238 121 ntBASIC1.28□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 SNORA70.25-201ENST00000612741 95 ntBASIC1.28□□□□□ -2.2
SENP3-EIF4A1A0A087X0R7 MIR26B-201ENST00000362251 77 ntBASIC1.27□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNU1-124P-201ENST00000363861 145 ntBASIC1.27□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNU6-939P-201ENST00000384634 107 ntBASIC1.27□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR519A2-201ENST00000384990 87 ntBASIC1.27□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR4802-201ENST00000581881 80 ntBASIC1.27□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR429-201ENST00000362106 83 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNU6-246P-201ENST00000384702 107 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR545-201ENST00000385085 106 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNA5SP266-201ENST00000410273 108 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR1468-201ENST00000410600 86 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 HMGN2P22-201ENST00000427588 175 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR4711-201ENST00000578274 70 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 AC090617.8-201ENST00000623339 167 ntBASIC1.26□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 SNORA40B-201ENST00000385573 128 ntBASIC1.25□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNA5SP25-201ENST00000410815 110 ntBASIC1.25□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR548X-201ENST00000580069 75 ntBASIC1.25□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 SNORD114-29-201ENST00000364819 70 ntBASIC1.24□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.24□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNU7-154P-201ENST00000516194 62 ntBASIC1.24□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNA5SP404-201ENST00000517118 132 ntBASIC1.24□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR4653-201ENST00000585107 83 ntBASIC1.24□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR532-201ENST00000385025 91 ntBASIC1.23□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 U7.6-201ENST00000610841 64 ntBASIC1.23□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNA5SP222-201ENST00000411039 105 ntBASIC1.22□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 RNA5SP470-201ENST00000516463 106 ntBASIC1.22□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 MIR4752-201ENST00000579672 72 ntBASIC1.22□□□□□ -2.21
SENP3-EIF4A1A0A087X0R7 SNORA2A-201ENST00000383885 135 ntBASIC1.21□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 MIR329-2-201ENST00000385029 84 ntBASIC1.2□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.2□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 SNORD115-25-201ENST00000362619 82 ntBASIC1.19□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 RNU6-810P-201ENST00000364001 107 ntBASIC1.19□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 Y_RNA.457-201ENST00000384237 111 ntBASIC1.19□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 RNU6-172P-201ENST00000411000 93 ntBASIC1.19□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 SNORD1B-201ENST00000363091 84 ntBASIC1.18□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 MIR6773-201ENST00000612812 74 ntBASIC1.18□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 RNA5SP67-201ENST00000516422 131 ntBASIC1.17□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 RNU1-29P-201ENST00000606574 126 ntBASIC1.17□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 RNU6-337P-201ENST00000391243 106 ntBASIC1.16□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 MIR548AG1-201ENST00000579932 66 ntBASIC1.16□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.15□□□□□ -2.22
SENP3-EIF4A1A0A087X0R7 AL353765.1-201ENST00000605514 183 ntBASIC1.15□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 Y_RNA.109-201ENST00000363215 102 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-838P-201ENST00000363399 108 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORD114-15-201ENST00000364687 72 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNA5SP517-201ENST00000364724 117 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNY1P8-201ENST00000383970 114 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 Z95118.1-201ENST00000421372 247 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 AC069271.1-201ENST00000445577 156 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORA62.5-201ENST00000516634 120 ntBASIC1.14□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-986P-201ENST00000363133 102 ntBASIC1.13□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORA36.2-201ENST00000384004 127 ntBASIC1.13□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-724P-201ENST00000390958 105 ntBASIC1.13□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNA5SP63-201ENST00000391225 112 ntBASIC1.13□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU7-188P-201ENST00000517063 64 ntBASIC1.13□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 MIR4490-201ENST00000582647 84 ntBASIC1.13□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNA5SP368-201ENST00000364298 116 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-458P-201ENST00000384179 107 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 MIRLET7B-201ENST00000385140 83 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 MIR140-201ENST00000385282 100 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-229P-201ENST00000516614 102 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 IGLVI-20-201ENST00000519296 130 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 U6.58-201ENST00000613107 107 ntBASIC1.12□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORA49-201ENST00000386157 136 ntBASIC1.11□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-1250P-201ENST00000391218 107 ntBASIC1.11□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 AC103810.9-201ENST00000606688 112 ntBASIC1.11□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC1.11□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNA5SP347-201ENST00000362445 119 ntBASIC1.1□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 MIR508-201ENST00000384857 115 ntBASIC1.1□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6ATAC31P-201ENST00000408513 126 ntBASIC1.1□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.1□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 RNU6-924P-201ENST00000362926 108 ntBASIC1.09□□□□□ -2.23
SENP3-EIF4A1A0A087X0R7 SNORD118-201ENST00000363593 134 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 226.4 ms