Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SENP3Q9H4L4 MIR4464-201ENST00000580818 92 ntBASIC3.33□□□□□ -1.88
SENP3Q9H4L4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SENP3Q9H4L4 MIR202-201ENST00000362219 110 ntBASIC3.32□□□□□ -1.88
SENP3Q9H4L4 MIR3198-2-201ENST00000577868 80 ntBASIC3.32□□□□□ -1.88
SENP3Q9H4L4 MIR1291-201ENST00000627649 87 ntBASIC3.32□□□□□ -1.88
SENP3Q9H4L4 MIR18A-201ENST00000362310 71 ntBASIC3.31□□□□□ -1.88
SENP3Q9H4L4 RNA5SP456-201ENST00000364002 114 ntBASIC3.31□□□□□ -1.88
SENP3Q9H4L4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.31□□□□□ -1.88
SENP3Q9H4L4 MIR378A-201ENST00000362177 66 ntBASIC3.3□□□□□ -1.88
SENP3Q9H4L4 MIR6845-201ENST00000613182 61 ntBASIC3.3□□□□□ -1.88
SENP3Q9H4L4 AL445584.3-201ENST00000617173 78 ntBASIC3.3□□□□□ -1.88
SENP3Q9H4L4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC3.29□□□□□ -1.88
SENP3Q9H4L4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SENP3Q9H4L4 MIR548Q-201ENST00000408404 100 ntBASIC3.27□□□□□ -1.89
SENP3Q9H4L4 TRMT112P2-201ENST00000512910 132 ntBASIC3.27□□□□□ -1.89
SENP3Q9H4L4 RNU1-124P-201ENST00000363861 145 ntBASIC3.26□□□□□ -1.89
SENP3Q9H4L4 MIR520D-201ENST00000385002 87 ntBASIC3.25□□□□□ -1.89
SENP3Q9H4L4 Y_RNA.613-201ENST00000410726 97 ntBASIC3.25□□□□□ -1.89
SENP3Q9H4L4 RNA5SP385-201ENST00000515947 110 ntBASIC3.25□□□□□ -1.89
SENP3Q9H4L4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SENP3Q9H4L4 MIR21-201ENST00000362134 72 ntBASIC3.24□□□□□ -1.89
SENP3Q9H4L4 RNU6-176P-201ENST00000517196 105 ntBASIC3.23□□□□□ -1.89
SENP3Q9H4L4 SNORA17.4-201ENST00000391287 132 ntBASIC3.22□□□□□ -1.89
SENP3Q9H4L4 RNA5SP169-201ENST00000517268 117 ntBASIC3.22□□□□□ -1.89
SENP3Q9H4L4 AP000676.1-201ENST00000533307 52 ntBASIC3.22□□□□□ -1.89
SENP3Q9H4L4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SENP3Q9H4L4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SENP3Q9H4L4 RNU6-732P-201ENST00000516033 103 ntBASIC3.21□□□□□ -1.9
SENP3Q9H4L4 RNA5SP480-201ENST00000516840 109 ntBASIC3.21□□□□□ -1.9
SENP3Q9H4L4 MIR4506-201ENST00000584693 77 ntBASIC3.21□□□□□ -1.9
SENP3Q9H4L4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
SENP3Q9H4L4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SENP3Q9H4L4 U7.6-201ENST00000610841 64 ntBASIC3.2□□□□□ -1.9
SENP3Q9H4L4 Y_RNA.519-201ENST00000384553 102 ntBASIC3.19□□□□□ -1.9
SENP3Q9H4L4 SNORD115.2-201ENST00000391126 59 ntBASIC3.19□□□□□ -1.9
SENP3Q9H4L4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SENP3Q9H4L4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.18□□□□□ -1.9
SENP3Q9H4L4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.16□□□□□ -1.9
SENP3Q9H4L4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SENP3Q9H4L4 MIR17-201ENST00000385012 84 ntBASIC3.16□□□□□ -1.9
SENP3Q9H4L4 RNY3P8-201ENST00000411366 126 ntBASIC3.16□□□□□ -1.9
SENP3Q9H4L4 MIR5092-201ENST00000583139 88 ntBASIC3.16□□□□□ -1.9
SENP3Q9H4L4 MIR583-201ENST00000384846 75 ntBASIC3.15□□□□□ -1.91
SENP3Q9H4L4 AC011195.1-201ENST00000578177 177 ntBASIC3.15□□□□□ -1.91
SENP3Q9H4L4 Y_RNA.783-201ENST00000613546 102 ntBASIC3.15□□□□□ -1.91
SENP3Q9H4L4 SNORA62.4-201ENST00000365504 151 ntBASIC3.14□□□□□ -1.91
SENP3Q9H4L4 SNORA25-201ENST00000384384 134 ntBASIC3.14□□□□□ -1.91
SENP3Q9H4L4 HMGN2P19-201ENST00000425149 265 ntBASIC3.14□□□□□ -1.91
SENP3Q9H4L4 MIR5007-201ENST00000583098 95 ntBASIC3.14□□□□□ -1.91
SENP3Q9H4L4 BX248123.2-201ENST00000606318 124 ntBASIC3.14□□□□□ -1.91
SENP3Q9H4L4 Y_RNA.134-201ENST00000363435 105 ntBASIC3.13□□□□□ -1.91
SENP3Q9H4L4 AC069271.1-201ENST00000445577 156 ntBASIC3.13□□□□□ -1.91
SENP3Q9H4L4 AC084368.1-201ENST00000620935 65 ntBASIC3.13□□□□□ -1.91
SENP3Q9H4L4 RNU4-45P-201ENST00000365469 141 ntBASIC3.12□□□□□ -1.91
SENP3Q9H4L4 MIR219B-201ENST00000637023 88 ntBASIC3.12□□□□□ -1.91
SENP3Q9H4L4 SNORD13-201ENST00000459299 104 ntBASIC3.11□□□□□ -1.91
SENP3Q9H4L4 MIR6766-201ENST00000622641 72 ntBASIC3.11□□□□□ -1.91
SENP3Q9H4L4 RN7SL660P-201ENST00000614852 299 ntBASIC3.1□□□□□ -1.91
SENP3Q9H4L4 MIR6779-201ENST00000617283 64 ntBASIC3.1□□□□□ -1.91
SENP3Q9H4L4 MIR6733-201ENST00000635723 61 ntBASIC3.09□□□□□ -1.91
SENP3Q9H4L4 MIR4677-201ENST00000584153 80 ntBASIC3.08□□□□□ -1.92
SENP3Q9H4L4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC3.08□□□□□ -1.92
SENP3Q9H4L4 SNORA2A-201ENST00000383885 135 ntBASIC3.07□□□□□ -1.92
SENP3Q9H4L4 AC003989.2-201ENST00000440224 169 ntBASIC3.07□□□□□ -1.92
SENP3Q9H4L4 RNU6-229P-201ENST00000516614 102 ntBASIC3.07□□□□□ -1.92
SENP3Q9H4L4 Y_RNA.382-201ENST00000365672 114 ntBASIC3.06□□□□□ -1.92
SENP3Q9H4L4 SNORD88.1-201ENST00000408684 91 ntBASIC3.06□□□□□ -1.92
SENP3Q9H4L4 MIR6734-201ENST00000621166 68 ntBASIC3.06□□□□□ -1.92
SENP3Q9H4L4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
SENP3Q9H4L4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
SENP3Q9H4L4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SENP3Q9H4L4 Y_RNA.540-201ENST00000384638 111 ntBASIC3.05□□□□□ -1.92
SENP3Q9H4L4 uc_338.36-201ENST00000622331 158 ntBASIC3.05□□□□□ -1.92
SENP3Q9H4L4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SENP3Q9H4L4 RNA5SP67-201ENST00000516422 131 ntBASIC3.04□□□□□ -1.92
SENP3Q9H4L4 Y_RNA.374-201ENST00000365606 101 ntBASIC3.03□□□□□ -1.92
SENP3Q9H4L4 SNORD124-201ENST00000459577 104 ntBASIC3.03□□□□□ -1.92
SENP3Q9H4L4 RNA5SP190-201ENST00000365222 118 ntBASIC3.02□□□□□ -1.93
SENP3Q9H4L4 RNU6-1232P-201ENST00000516299 86 ntBASIC3.02□□□□□ -1.93
SENP3Q9H4L4 MIR8081-201ENST00000611533 95 ntBASIC3.02□□□□□ -1.93
SENP3Q9H4L4 AP1B1P2-201ENST00000416196 106 ntBASIC3.01□□□□□ -1.93
SENP3Q9H4L4 SNORD19-201ENST00000391191 68 ntBASIC3□□□□□ -1.93
SENP3Q9H4L4 SNORD99-201ENST00000408612 74 ntBASIC3□□□□□ -1.93
SENP3Q9H4L4 RNU6-1133P-201ENST00000410963 100 ntBASIC3□□□□□ -1.93
SENP3Q9H4L4 AL391099.1-201ENST00000624635 187 ntBASIC2.99□□□□□ -1.93
SENP3Q9H4L4 RNA5SP393-201ENST00000363423 117 ntBASIC2.98□□□□□ -1.93
SENP3Q9H4L4 RNU6-42P-201ENST00000384165 107 ntBASIC2.98□□□□□ -1.93
SENP3Q9H4L4 MIR200A-201ENST00000384875 90 ntBASIC2.98□□□□□ -1.93
SENP3Q9H4L4 RNA5SP327-201ENST00000362494 101 ntBASIC2.97□□□□□ -1.93
SENP3Q9H4L4 MIR676-201ENST00000390702 67 ntBASIC2.97□□□□□ -1.93
SENP3Q9H4L4 MIR6895-201ENST00000613497 78 ntBASIC2.96□□□□□ -1.94
SENP3Q9H4L4 MIR4303-201ENST00000581299 66 ntBASIC2.95□□□□□ -1.94
SENP3Q9H4L4 MIR6132-201ENST00000622083 109 ntBASIC2.95□□□□□ -1.94
SENP3Q9H4L4 MIR501-201ENST00000390204 84 ntBASIC2.94□□□□□ -1.94
SENP3Q9H4L4 SNORA48.3-201ENST00000391081 134 ntBASIC2.94□□□□□ -1.94
SENP3Q9H4L4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.94□□□□□ -1.94
SENP3Q9H4L4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
SENP3Q9H4L4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
SENP3Q9H4L4 MIR19B1-201ENST00000384829 87 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms