Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR6086-201ENST00000638065 55 ntBASIC0.58□□□□□ -2.32
NKX2-4Q9H2Z4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.58□□□□□ -2.32
NKX2-4Q9H2Z4 Y_RNA.125-201ENST00000363371 111 ntBASIC0.57□□□□□ -2.32
NKX2-4Q9H2Z4 MIR548AE1-201ENST00000583292 70 ntBASIC0.57□□□□□ -2.32
NKX2-4Q9H2Z4 MIR3675-201ENST00000583661 73 ntBASIC0.57□□□□□ -2.32
NKX2-4Q9H2Z4 RNU6-330P-201ENST00000363015 107 ntBASIC0.56□□□□□ -2.32
NKX2-4Q9H2Z4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.56□□□□□ -2.32
NKX2-4Q9H2Z4 RNU7-129P-201ENST00000516128 62 ntBASIC0.56□□□□□ -2.32
NKX2-4Q9H2Z4 SNORA62.5-201ENST00000516634 120 ntBASIC0.56□□□□□ -2.32
NKX2-4Q9H2Z4 MIR4662A-201ENST00000637499 67 ntBASIC0.56□□□□□ -2.32
NKX2-4Q9H2Z4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.56□□□□□ -2.32
NKX2-4Q9H2Z4 MIR652-201ENST00000385278 98 ntBASIC0.55□□□□□ -2.32
NKX2-4Q9H2Z4 AC114737.2-201ENST00000421583 173 ntBASIC0.55□□□□□ -2.32
NKX2-4Q9H2Z4 MIR103A1-201ENST00000362165 78 ntBASIC0.54□□□□□ -2.32
NKX2-4Q9H2Z4 MIRLET7D-201ENST00000362263 87 ntBASIC0.54□□□□□ -2.32
NKX2-4Q9H2Z4 RNA5SP128-201ENST00000365305 116 ntBASIC0.54□□□□□ -2.32
NKX2-4Q9H2Z4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.54□□□□□ -2.32
NKX2-4Q9H2Z4 RNA5SP285-201ENST00000516619 119 ntBASIC0.54□□□□□ -2.32
NKX2-4Q9H2Z4 Y_RNA.788-201ENST00000622394 112 ntBASIC0.54□□□□□ -2.32
NKX2-4Q9H2Z4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
NKX2-4Q9H2Z4 SCARNA17.3-201ENST00000516381 125 ntBASIC0.53□□□□□ -2.32
NKX2-4Q9H2Z4 RNU6-70P-201ENST00000516438 60 ntBASIC0.53□□□□□ -2.32
NKX2-4Q9H2Z4 MIR203A-201ENST00000384836 110 ntBASIC0.52□□□□□ -2.33
NKX2-4Q9H2Z4 MIR92A1-201ENST00000385233 78 ntBASIC0.52□□□□□ -2.33
NKX2-4Q9H2Z4 MIR501-201ENST00000390204 84 ntBASIC0.52□□□□□ -2.33
NKX2-4Q9H2Z4 RNA5SP63-201ENST00000391225 112 ntBASIC0.52□□□□□ -2.33
NKX2-4Q9H2Z4 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.52□□□□□ -2.33
NKX2-4Q9H2Z4 RNU6-776P-201ENST00000364403 104 ntBASIC0.51□□□□□ -2.33
NKX2-4Q9H2Z4 RNU6-1022P-201ENST00000365049 104 ntBASIC0.51□□□□□ -2.33
NKX2-4Q9H2Z4 RNU6-260P-201ENST00000384092 107 ntBASIC0.51□□□□□ -2.33
NKX2-4Q9H2Z4 MIR889-201ENST00000401280 79 ntBASIC0.51□□□□□ -2.33
NKX2-4Q9H2Z4 SNORA9.1-201ENST00000362412 131 ntBASIC0.5□□□□□ -2.33
NKX2-4Q9H2Z4 MIR516B1-201ENST00000385211 90 ntBASIC0.5□□□□□ -2.33
NKX2-4Q9H2Z4 AC073261.1-201ENST00000429409 121 ntBASIC0.5□□□□□ -2.33
NKX2-4Q9H2Z4 MIR3134-201ENST00000579433 74 ntBASIC0.5□□□□□ -2.33
NKX2-4Q9H2Z4 MIR4677-201ENST00000584153 80 ntBASIC0.5□□□□□ -2.33
NKX2-4Q9H2Z4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
NKX2-4Q9H2Z4 RNU6-990P-201ENST00000364385 104 ntBASIC0.49□□□□□ -2.33
NKX2-4Q9H2Z4 MIR548AD-201ENST00000584780 82 ntBASIC0.49□□□□□ -2.33
NKX2-4Q9H2Z4 MIR3657-201ENST00000584818 117 ntBASIC0.49□□□□□ -2.33
NKX2-4Q9H2Z4 MIR664A-201ENST00000626086 82 ntBASIC0.49□□□□□ -2.33
NKX2-4Q9H2Z4 MIR499B-201ENST00000636498 73 ntBASIC0.49□□□□□ -2.33
NKX2-4Q9H2Z4 RNU6-411P-201ENST00000384451 107 ntBASIC0.48□□□□□ -2.33
NKX2-4Q9H2Z4 AC023932.2-201ENST00000603176 175 ntBASIC0.48□□□□□ -2.33
NKX2-4Q9H2Z4 AC084368.1-201ENST00000620935 65 ntBASIC0.48□□□□□ -2.33
NKX2-4Q9H2Z4 AC090625.1-201ENST00000357130 210 ntBASIC0.47□□□□□ -2.33
NKX2-4Q9H2Z4 uc_338.17-201ENST00000619633 179 ntBASIC0.47□□□□□ -2.33
NKX2-4Q9H2Z4 SNORD45.1-201ENST00000363181 77 ntBASIC0.46□□□□□ -2.34
NKX2-4Q9H2Z4 SNORD114-29-201ENST00000364819 70 ntBASIC0.46□□□□□ -2.34
NKX2-4Q9H2Z4 MIR20A-201ENST00000362279 71 ntBASIC0.45□□□□□ -2.34
NKX2-4Q9H2Z4 SNORA2.1-201ENST00000363089 137 ntBASIC0.45□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6-815P-201ENST00000384080 113 ntBASIC0.45□□□□□ -2.34
NKX2-4Q9H2Z4 AL157398.1-201ENST00000452981 186 ntBASIC0.45□□□□□ -2.34
NKX2-4Q9H2Z4 Y_RNA.545-201ENST00000384652 105 ntBASIC0.44□□□□□ -2.34
NKX2-4Q9H2Z4 MIR154-201ENST00000385243 84 ntBASIC0.44□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6-587P-201ENST00000391282 106 ntBASIC0.44□□□□□ -2.34
NKX2-4Q9H2Z4 AC244090.1-201ENST00000441884 93 ntBASIC0.44□□□□□ -2.34
NKX2-4Q9H2Z4 RNA5SP147-201ENST00000516493 109 ntBASIC0.44□□□□□ -2.34
NKX2-4Q9H2Z4 RNU7-188P-201ENST00000517063 64 ntBASIC0.44□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6-1296P-201ENST00000383879 107 ntBASIC0.43□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6-1241P-201ENST00000384536 107 ntBASIC0.43□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.43□□□□□ -2.34
NKX2-4Q9H2Z4 MIR8053-201ENST00000613344 75 ntBASIC0.43□□□□□ -2.34
NKX2-4Q9H2Z4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 SNORA63.6-201ENST00000364921 119 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 RNU6-604P-201ENST00000390917 100 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 MIR1265-201ENST00000408444 86 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 AC021146.9-201ENST00000512503 156 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 AC069113.3-201ENST00000521019 150 ntBASIC0.42□□□□□ -2.34
NKX2-4Q9H2Z4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.41□□□□□ -2.34
NKX2-4Q9H2Z4 MIR582-201ENST00000365731 98 ntBASIC0.41□□□□□ -2.34
NKX2-4Q9H2Z4 MIR548E-201ENST00000408287 88 ntBASIC0.41□□□□□ -2.34
NKX2-4Q9H2Z4 Y_RNA.250-201ENST00000364542 110 ntBASIC0.4□□□□□ -2.35
NKX2-4Q9H2Z4 RNU6-127P-201ENST00000390897 107 ntBASIC0.4□□□□□ -2.35
NKX2-4Q9H2Z4 SNORA75.1-201ENST00000391130 148 ntBASIC0.4□□□□□ -2.35
NKX2-4Q9H2Z4 RNU6-1015P-201ENST00000517121 99 ntBASIC0.4□□□□□ -2.35
NKX2-4Q9H2Z4 MIR6759-201ENST00000638110 65 ntBASIC0.4□□□□□ -2.35
NKX2-4Q9H2Z4 Y_RNA.565-201ENST00000384719 101 ntBASIC0.39□□□□□ -2.35
NKX2-4Q9H2Z4 RNU6-687P-201ENST00000516443 89 ntBASIC0.39□□□□□ -2.35
NKX2-4Q9H2Z4 SNORA40.17-201ENST00000517256 115 ntBASIC0.39□□□□□ -2.35
NKX2-4Q9H2Z4 MIR3925-201ENST00000584674 77 ntBASIC0.39□□□□□ -2.35
NKX2-4Q9H2Z4 snoU13.13-201ENST00000458842 104 ntBASIC0.38□□□□□ -2.35
NKX2-4Q9H2Z4 SNORD2-201ENST00000459163 69 ntBASIC0.38□□□□□ -2.35
NKX2-4Q9H2Z4 RNU6-782P-201ENST00000516852 104 ntBASIC0.38□□□□□ -2.35
NKX2-4Q9H2Z4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.38□□□□□ -2.35
NKX2-4Q9H2Z4 MIR4636-201ENST00000582271 80 ntBASIC0.38□□□□□ -2.35
NKX2-4Q9H2Z4 MIR329-2-201ENST00000385029 84 ntBASIC0.37□□□□□ -2.35
NKX2-4Q9H2Z4 MIR6718-201ENST00000616153 80 ntBASIC0.37□□□□□ -2.35
NKX2-4Q9H2Z4 MIR876-201ENST00000401147 81 ntBASIC0.36□□□□□ -2.35
NKX2-4Q9H2Z4 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
NKX2-4Q9H2Z4 RNU6-871P-201ENST00000516122 100 ntBASIC0.36□□□□□ -2.35
NKX2-4Q9H2Z4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.36□□□□□ -2.35
NKX2-4Q9H2Z4 SNORD115-22-201ENST00000364456 82 ntBASIC0.35□□□□□ -2.35
NKX2-4Q9H2Z4 RNU6-1162P-201ENST00000384443 104 ntBASIC0.35□□□□□ -2.35
NKX2-4Q9H2Z4 SNORD45A-201ENST00000384512 84 ntBASIC0.35□□□□□ -2.35
NKX2-4Q9H2Z4 MIR643-201ENST00000385267 97 ntBASIC0.35□□□□□ -2.35
NKX2-4Q9H2Z4 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
NKX2-4Q9H2Z4 MIR4315-1-201ENST00000636800 73 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 244.1 ms