Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 Y_RNA.246-201ENST00000364495 108 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 MIR582-201ENST00000365731 98 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 SNORA25-201ENST00000384384 134 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 MIR9-3-201ENST00000385084 90 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 FABP5P4-201ENST00000437203 171 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 RNU7-119P-201ENST00000459279 63 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 MIR4419B-201ENST00000577260 68 ntBASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
PCDHB3Q9Y5E6 SNORD48-201ENST00000364953 64 ntBASIC1.73□□□□□ -2.13
PCDHB3Q9Y5E6 Y_RNA.325-201ENST00000365171 122 ntBASIC1.73□□□□□ -2.13
PCDHB3Q9Y5E6 AC003989.2-201ENST00000440224 169 ntBASIC1.73□□□□□ -2.13
PCDHB3Q9Y5E6 MIR4255-201ENST00000579351 72 ntBASIC1.73□□□□□ -2.13
PCDHB3Q9Y5E6 MIR548AE1-201ENST00000583292 70 ntBASIC1.73□□□□□ -2.13
PCDHB3Q9Y5E6 MIR502-201ENST00000606349 86 ntBASIC1.73□□□□□ -2.13
PCDHB3Q9Y5E6 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.72□□□□□ -2.13
PCDHB3Q9Y5E6 MIR548E-201ENST00000408287 88 ntBASIC1.72□□□□□ -2.13
PCDHB3Q9Y5E6 MIR6828-201ENST00000636181 60 ntBASIC1.72□□□□□ -2.13
PCDHB3Q9Y5E6 SNORA67.5-201ENST00000391036 107 ntBASIC1.71□□□□□ -2.14
PCDHB3Q9Y5E6 SNORD13-201ENST00000459299 104 ntBASIC1.71□□□□□ -2.14
PCDHB3Q9Y5E6 snoU13.31-201ENST00000607291 104 ntBASIC1.71□□□□□ -2.14
PCDHB3Q9Y5E6 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.7□□□□□ -2.14
PCDHB3Q9Y5E6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
PCDHB3Q9Y5E6 RNU6-1246P-201ENST00000391064 107 ntBASIC1.7□□□□□ -2.14
PCDHB3Q9Y5E6 RNU6-980P-201ENST00000516925 103 ntBASIC1.7□□□□□ -2.14
PCDHB3Q9Y5E6 RNU6-231P-201ENST00000517122 103 ntBASIC1.7□□□□□ -2.14
PCDHB3Q9Y5E6 MIR4473-201ENST00000583731 91 ntBASIC1.7□□□□□ -2.14
PCDHB3Q9Y5E6 SNORA9.1-201ENST00000362412 131 ntBASIC1.69□□□□□ -2.14
PCDHB3Q9Y5E6 RNA5SP327-201ENST00000362494 101 ntBASIC1.69□□□□□ -2.14
PCDHB3Q9Y5E6 RNA5SP227-201ENST00000516184 113 ntBASIC1.68□□□□□ -2.14
PCDHB3Q9Y5E6 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.68□□□□□ -2.14
PCDHB3Q9Y5E6 MIR8081-201ENST00000611533 95 ntBASIC1.68□□□□□ -2.14
PCDHB3Q9Y5E6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.67□□□□□ -2.14
PCDHB3Q9Y5E6 SNORA25.8-201ENST00000364831 128 ntBASIC1.67□□□□□ -2.14
PCDHB3Q9Y5E6 AC006210.1-201ENST00000424882 111 ntBASIC1.67□□□□□ -2.14
PCDHB3Q9Y5E6 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.66□□□□□ -2.14
PCDHB3Q9Y5E6 CYP3A54P-201ENST00000566950 75 ntBASIC1.66□□□□□ -2.14
PCDHB3Q9Y5E6 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.66□□□□□ -2.14
PCDHB3Q9Y5E6 RNA5SP363-201ENST00000365072 115 ntBASIC1.65□□□□□ -2.15
PCDHB3Q9Y5E6 MIR19B1-201ENST00000384829 87 ntBASIC1.65□□□□□ -2.15
PCDHB3Q9Y5E6 SNORA17.3-201ENST00000391159 129 ntBASIC1.65□□□□□ -2.15
PCDHB3Q9Y5E6 SNORD110-201ENST00000408189 75 ntBASIC1.65□□□□□ -2.15
PCDHB3Q9Y5E6 U6.96-201ENST00000636425 70 ntBASIC1.65□□□□□ -2.15
PCDHB3Q9Y5E6 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.63□□□□□ -2.15
PCDHB3Q9Y5E6 SNORA36.1-201ENST00000363424 132 ntBASIC1.63□□□□□ -2.15
PCDHB3Q9Y5E6 AL021921.1-201ENST00000442774 93 ntBASIC1.63□□□□□ -2.15
PCDHB3Q9Y5E6 SNORD124-201ENST00000459577 104 ntBASIC1.63□□□□□ -2.15
PCDHB3Q9Y5E6 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.63□□□□□ -2.15
PCDHB3Q9Y5E6 DLEU2_4.2-201ENST00000616613 58 ntBASIC1.63□□□□□ -2.15
PCDHB3Q9Y5E6 RNU6-35P-201ENST00000384530 107 ntBASIC1.62□□□□□ -2.15
PCDHB3Q9Y5E6 SNORD116-16-201ENST00000384533 92 ntBASIC1.62□□□□□ -2.15
PCDHB3Q9Y5E6 MIR516B1-201ENST00000385211 90 ntBASIC1.62□□□□□ -2.15
PCDHB3Q9Y5E6 SNORD116.2-201ENST00000391251 93 ntBASIC1.62□□□□□ -2.15
PCDHB3Q9Y5E6 SNORD53B-201ENST00000577887 78 ntBASIC1.62□□□□□ -2.15
PCDHB3Q9Y5E6 AC090617.8-201ENST00000623339 167 ntBASIC1.62□□□□□ -2.15
PCDHB3Q9Y5E6 Y_RNA.74-201ENST00000362911 99 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 Y_RNA.226-201ENST00000364337 114 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 MIR200A-201ENST00000384875 90 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 RNU4-62P-201ENST00000410125 130 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 AP1B1P2-201ENST00000416196 106 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 TRMT112P2-201ENST00000512910 132 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 RNU6-518P-201ENST00000516056 96 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 RNA5SP268-201ENST00000516828 124 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 SNORA40.16-201ENST00000517238 121 ntBASIC1.61□□□□□ -2.15
PCDHB3Q9Y5E6 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
PCDHB3Q9Y5E6 MIR1287-201ENST00000408492 90 ntBASIC1.6□□□□□ -2.15
PCDHB3Q9Y5E6 RNU6-321P-201ENST00000410912 106 ntBASIC1.6□□□□□ -2.15
PCDHB3Q9Y5E6 AC025627.3-201ENST00000582078 182 ntBASIC1.6□□□□□ -2.15
PCDHB3Q9Y5E6 MIR18A-201ENST00000362310 71 ntBASIC1.59□□□□□ -2.15
PCDHB3Q9Y5E6 RNU4-33P-201ENST00000364316 85 ntBASIC1.59□□□□□ -2.15
PCDHB3Q9Y5E6 MIR7107-201ENST00000611489 80 ntBASIC1.58□□□□□ -2.16
PCDHB3Q9Y5E6 RPS29P23-201ENST00000458635 123 ntBASIC1.57□□□□□ -2.16
PCDHB3Q9Y5E6 MIR4303-201ENST00000581299 66 ntBASIC1.57□□□□□ -2.16
PCDHB3Q9Y5E6 MIR7110-201ENST00000612638 86 ntBASIC1.57□□□□□ -2.16
PCDHB3Q9Y5E6 AC243829.6-201ENST00000612652 106 ntBASIC1.57□□□□□ -2.16
PCDHB3Q9Y5E6 SNORA70.25-201ENST00000612741 95 ntBASIC1.57□□□□□ -2.16
PCDHB3Q9Y5E6 Y_RNA.282-201ENST00000364793 102 ntBASIC1.56□□□□□ -2.16
PCDHB3Q9Y5E6 AC243829.3-201ENST00000622177 108 ntBASIC1.56□□□□□ -2.16
PCDHB3Q9Y5E6 SNORD26-201ENST00000384147 75 ntBASIC1.55□□□□□ -2.16
PCDHB3Q9Y5E6 MIR527-201ENST00000385244 85 ntBASIC1.55□□□□□ -2.16
PCDHB3Q9Y5E6 RNU6-930P-201ENST00000390938 100 ntBASIC1.55□□□□□ -2.16
PCDHB3Q9Y5E6 MIR1255B2-201ENST00000408618 67 ntBASIC1.55□□□□□ -2.16
PCDHB3Q9Y5E6 AC011195.1-201ENST00000578177 177 ntBASIC1.55□□□□□ -2.16
PCDHB3Q9Y5E6 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
PCDHB3Q9Y5E6 MIR519A2-201ENST00000384990 87 ntBASIC1.54□□□□□ -2.16
PCDHB3Q9Y5E6 RNU7-95P-201ENST00000459222 64 ntBASIC1.54□□□□□ -2.16
PCDHB3Q9Y5E6 RNA5SP94-201ENST00000516917 108 ntBASIC1.54□□□□□ -2.16
PCDHB3Q9Y5E6 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
PCDHB3Q9Y5E6 SNORA67.6-201ENST00000391093 99 ntBASIC1.53□□□□□ -2.16
PCDHB3Q9Y5E6 SNORD99-201ENST00000408612 74 ntBASIC1.53□□□□□ -2.16
PCDHB3Q9Y5E6 RNA5SP255-201ENST00000516370 107 ntBASIC1.53□□□□□ -2.16
PCDHB3Q9Y5E6 MIR499A-201ENST00000384903 122 ntBASIC1.52□□□□□ -2.17
PCDHB3Q9Y5E6 HMGN2P22-201ENST00000427588 175 ntBASIC1.52□□□□□ -2.17
PCDHB3Q9Y5E6 MIR4752-201ENST00000579672 72 ntBASIC1.52□□□□□ -2.17
PCDHB3Q9Y5E6 MIR548X-201ENST00000580069 75 ntBASIC1.52□□□□□ -2.17
PCDHB3Q9Y5E6 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.52□□□□□ -2.17
PCDHB3Q9Y5E6 RNU1-42P-201ENST00000364033 160 ntBASIC1.51□□□□□ -2.17
PCDHB3Q9Y5E6 RNU4-45P-201ENST00000365469 141 ntBASIC1.51□□□□□ -2.17
PCDHB3Q9Y5E6 SNORA40B-201ENST00000385573 128 ntBASIC1.51□□□□□ -2.17
PCDHB3Q9Y5E6 AC244090.1-201ENST00000441884 93 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 175.3 ms