Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MIR5704-201ENST00000584029 77 ntBASIC-1.01□□□□□ -2.57
SHANK3Q9BYB0 U7.2-201ENST00000607576 63 ntBASIC-1.01□□□□□ -2.57
SHANK3Q9BYB0 SNORD115-23-201ENST00000364461 82 ntBASIC-1.01□□□□□ -2.57
SHANK3Q9BYB0 RNU6-62P-201ENST00000516526 102 ntBASIC-1.01□□□□□ -2.57
SHANK3Q9BYB0 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.01□□□□□ -2.57
SHANK3Q9BYB0 AC025521.1-201ENST00000621624 286 ntBASIC-1.01□□□□□ -2.57
SHANK3Q9BYB0 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.02□□□□□ -2.57
SHANK3Q9BYB0 SNORD45B-201ENST00000364617 72 ntBASIC-1.02□□□□□ -2.57
SHANK3Q9BYB0 MIR4694-201ENST00000578534 80 ntBASIC-1.02□□□□□ -2.57
SHANK3Q9BYB0 SNORA63.6-201ENST00000364921 119 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 Y_RNA.604-201ENST00000410574 102 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 RNU7-85P-201ENST00000458851 63 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 RNU6-327P-201ENST00000516270 127 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 AC068339.1-201ENST00000526965 141 ntBASIC-1.03□□□□□ -2.57
SHANK3Q9BYB0 MIR582-201ENST00000365731 98 ntBASIC-1.03□□□□□ -2.58
SHANK3Q9BYB0 SNORD75.2-201ENST00000408784 58 ntBASIC-1.03□□□□□ -2.58
SHANK3Q9BYB0 RNU6-592P-201ENST00000411333 103 ntBASIC-1.03□□□□□ -2.58
SHANK3Q9BYB0 AL353813.1-201ENST00000440700 253 ntBASIC-1.03□□□□□ -2.58
SHANK3Q9BYB0 AC097510.1-201ENST00000510945 133 ntBASIC-1.03□□□□□ -2.58
SHANK3Q9BYB0 RNU6-1045P-201ENST00000516321 107 ntBASIC-1.03□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.04□□□□□ -2.58
SHANK3Q9BYB0 SNORD64-201ENST00000386683 67 ntBASIC-1.04□□□□□ -2.58
SHANK3Q9BYB0 AC021146.9-201ENST00000512503 156 ntBASIC-1.04□□□□□ -2.58
SHANK3Q9BYB0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.04□□□□□ -2.58
SHANK3Q9BYB0 RNU6-682P-201ENST00000363843 106 ntBASIC-1.05□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.05□□□□□ -2.58
SHANK3Q9BYB0 RNU6-644P-201ENST00000391155 98 ntBASIC-1.05□□□□□ -2.58
SHANK3Q9BYB0 RNU6-394P-201ENST00000410735 107 ntBASIC-1.05□□□□□ -2.58
SHANK3Q9BYB0 MIR548X2-201ENST00000579776 100 ntBASIC-1.05□□□□□ -2.58
SHANK3Q9BYB0 RNU6-208P-201ENST00000362431 107 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 RNU6-196P-201ENST00000384315 107 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 AL158147.1-201ENST00000443970 75 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 AL118496.2-201ENST00000448300 230 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 RNU6-132P-201ENST00000383863 107 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 RNU6-260P-201ENST00000384092 107 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 SNORD4B-201ENST00000459083 72 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 MIR548Z-201ENST00000584743 97 ntBASIC-1.06□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.07□□□□□ -2.58
SHANK3Q9BYB0 RNU6-924P-201ENST00000362926 108 ntBASIC-1.07□□□□□ -2.58
SHANK3Q9BYB0 MIR124-2-201ENST00000385081 109 ntBASIC-1.07□□□□□ -2.58
SHANK3Q9BYB0 FGF7P7-201ENST00000514120 227 ntBASIC-1.07□□□□□ -2.58
SHANK3Q9BYB0 AC140658.3-201ENST00000567603 271 ntBASIC-1.07□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.08□□□□□ -2.58
SHANK3Q9BYB0 RNU6-431P-201ENST00000383874 107 ntBASIC-1.08□□□□□ -2.58
SHANK3Q9BYB0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.08□□□□□ -2.58
SHANK3Q9BYB0 RNU6-781P-201ENST00000516377 101 ntBASIC-1.08□□□□□ -2.58
SHANK3Q9BYB0 RNA5SP470-201ENST00000516463 106 ntBASIC-1.08□□□□□ -2.58
SHANK3Q9BYB0 U6.96-201ENST00000636425 70 ntBASIC-1.08□□□□□ -2.58
SHANK3Q9BYB0 RNY3P2-201ENST00000362918 102 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 MIR147A-201ENST00000385079 72 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 CYP3A54P-201ENST00000566950 75 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 MIR382-201ENST00000637119 76 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.8-201ENST00000362353 102 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 RNU6-119P-201ENST00000364882 107 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 SNORD58C-201ENST00000365223 64 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 SNORA24B-201ENST00000384176 131 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 SCARNA18B-201ENST00000458806 135 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 snoU83B.1-201ENST00000517136 88 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 MIR4503-201ENST00000582187 83 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 AC006254.2-201ENST00000603259 279 ntBASIC-1.09□□□□□ -2.58
SHANK3Q9BYB0 SNORD114-17-201ENST00000364699 75 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 RNU6-200P-201ENST00000364743 107 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 MIR4306-201ENST00000583390 91 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 AL353621.2-201ENST00000605340 133 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 AC004792.1-201ENST00000614523 137 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 MIR6509-201ENST00000614603 85 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.1□□□□□ -2.59
SHANK3Q9BYB0 MIR548A1-201ENST00000385041 97 ntBASIC-1.11□□□□□ -2.59
SHANK3Q9BYB0 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.11□□□□□ -2.59
SHANK3Q9BYB0 MIR3140-201ENST00000583685 90 ntBASIC-1.11□□□□□ -2.59
SHANK3Q9BYB0 RNU6-519P-201ENST00000410590 108 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 MIR3064-201ENST00000581130 66 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 MIR4499-201ENST00000584834 69 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 AL445584.3-201ENST00000617173 78 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 RNU6-379P-201ENST00000363813 104 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 RNU6-813P-201ENST00000384691 107 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 MIR3144-201ENST00000579460 79 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 MIR3613-201ENST00000579844 87 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 AL353803.5-201ENST00000599815 141 ntBASIC-1.12□□□□□ -2.59
SHANK3Q9BYB0 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.13□□□□□ -2.59
SHANK3Q9BYB0 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.13□□□□□ -2.59
SHANK3Q9BYB0 MTND3P2-201ENST00000438452 342 ntBASIC-1.13□□□□□ -2.59
SHANK3Q9BYB0 AL691482.2-201ENST00000457453 84 ntBASIC-1.13□□□□□ -2.59
SHANK3Q9BYB0 uc_338.19-201ENST00000616808 99 ntBASIC-1.13□□□□□ -2.59
SHANK3Q9BYB0 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.14□□□□□ -2.59
SHANK3Q9BYB0 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.14□□□□□ -2.59
SHANK3Q9BYB0 MT-TG-201ENST00000387429 68 ntBASIC-1.14□□□□□ -2.59
SHANK3Q9BYB0 MIR6739-201ENST00000622461 75 ntBASIC-1.14□□□□□ -2.59
SHANK3Q9BYB0 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.15□□□□□ -2.59
SHANK3Q9BYB0 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.15□□□□□ -2.59
SHANK3Q9BYB0 MIR5009-201ENST00000578736 100 ntBASIC-1.15□□□□□ -2.59
SHANK3Q9BYB0 SNORD116-18-201ENST00000383961 92 ntBASIC-1.15□□□□□ -2.59
SHANK3Q9BYB0 MIR521-2-201ENST00000384818 87 ntBASIC-1.15□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms