Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 Y_RNA.31-201ENST00000362574 102 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 MIR548I1-201ENST00000408810 149 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 Y_RNA.661-201ENST00000516003 99 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 RNU7-6P-201ENST00000516845 62 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 MIR3163-201ENST00000581592 73 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 AC119751.7-201ENST00000600494 245 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 AL132765.2-201ENST00000610812 351 ntBASIC-2.04□□□□□ -2.74
USF3Q68DE3 MIR759-201ENST00000390224 91 ntBASIC-2.05□□□□□ -2.74
USF3Q68DE3 RNU6-381P-201ENST00000391259 108 ntBASIC-2.05□□□□□ -2.74
USF3Q68DE3 RNY4P25-201ENST00000459254 96 ntBASIC-2.05□□□□□ -2.74
USF3Q68DE3 MIR3611-201ENST00000584484 83 ntBASIC-2.05□□□□□ -2.74
USF3Q68DE3 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.05□□□□□ -2.74
USF3Q68DE3 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-2.05□□□□□ -2.74
USF3Q68DE3 RNU6-518P-201ENST00000516056 96 ntBASIC-2.05□□□□□ -2.74
USF3Q68DE3 RNY1P1-201ENST00000364372 112 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 RNU6-1042P-201ENST00000384204 107 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 AL118496.2-201ENST00000448300 230 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 Y_RNA.8-201ENST00000362353 102 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 SNORD18B-201ENST00000365659 72 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 RNU6-211P-201ENST00000384047 107 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 SNORD116-29-201ENST00000384516 83 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 MIR548A3-201ENST00000385297 97 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 DEFB108C-201ENST00000400154 252 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 RNU6-807P-201ENST00000516805 107 ntBASIC-2.06□□□□□ -2.74
USF3Q68DE3 MIR5693-201ENST00000577722 73 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 RPS29P30-201ENST00000600975 111 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 AC093424.1-201ENST00000604999 338 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 AC012531.4-201ENST00000616509 177 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 RNY4P14-201ENST00000363656 96 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 RNU6-682P-201ENST00000363843 106 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 snoU2_19.4-201ENST00000364329 80 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 RNA5SP292-201ENST00000390974 118 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 AC090582.1-201ENST00000636321 199 ntBASIC-2.07□□□□□ -2.74
USF3Q68DE3 Y_RNA.236-201ENST00000364427 111 ntBASIC-2.08□□□□□ -2.74
USF3Q68DE3 RNU6-121P-201ENST00000410525 99 ntBASIC-2.08□□□□□ -2.74
USF3Q68DE3 Y_RNA.629-201ENST00000411368 105 ntBASIC-2.08□□□□□ -2.74
USF3Q68DE3 RNU6-956P-201ENST00000458868 103 ntBASIC-2.08□□□□□ -2.74
USF3Q68DE3 MIR3646-201ENST00000578301 84 ntBASIC-2.08□□□□□ -2.74
USF3Q68DE3 Y_RNA.89-201ENST00000363031 102 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 Y_RNA.155-201ENST00000363632 101 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 AC080013.6-201ENST00000606185 215 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 RNU6-508P-201ENST00000363231 103 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 Y_RNA.467-201ENST00000384297 102 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 MIR513C-201ENST00000401352 84 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 RNU6-752P-201ENST00000516376 102 ntBASIC-2.09□□□□□ -2.74
USF3Q68DE3 RNU6-247P-201ENST00000362636 107 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 RNU6-519P-201ENST00000410590 108 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 Y_RNA.401-201ENST00000383965 117 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 RNU6-409P-201ENST00000384114 104 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 MIR548P-201ENST00000408336 84 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 AL121914.1-201ENST00000450188 156 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 SNORD4B-201ENST00000459083 72 ntBASIC-2.1□□□□□ -2.75
USF3Q68DE3 RNU6-768P-201ENST00000384683 107 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 RNU6-578P-201ENST00000390980 103 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 Y_RNA.651-201ENST00000459380 103 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 Y_RNA.16-201ENST00000362421 102 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 MIR548AA1-201ENST00000384971 97 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 Y_RNA.590-201ENST00000410140 107 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 RNU6-584P-201ENST00000410350 95 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 AC107308.1-201ENST00000615897 301 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 AC013734.1-201ENST00000619329 111 ntBASIC-2.11□□□□□ -2.75
USF3Q68DE3 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.12□□□□□ -2.75
USF3Q68DE3 MIR559-201ENST00000385188 96 ntBASIC-2.12□□□□□ -2.75
USF3Q68DE3 MIR548N-201ENST00000408742 75 ntBASIC-2.12□□□□□ -2.75
USF3Q68DE3 RNU4-14P-201ENST00000410858 122 ntBASIC-2.12□□□□□ -2.75
USF3Q68DE3 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-2.12□□□□□ -2.75
USF3Q68DE3 RNU6-834P-201ENST00000362367 110 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 RNU6-238P-201ENST00000363313 106 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.163-201ENST00000363702 113 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.213-201ENST00000364178 111 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 RNU6-649P-201ENST00000384463 107 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-2.13□□□□□ -2.75
USF3Q68DE3 AC104985.2-201ENST00000620598 500 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.690-201ENST00000516603 95 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.812-201ENST00000610788 101 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.784-201ENST00000613803 101 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.787-201ENST00000616522 101 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.780-201ENST00000617336 101 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.801-201ENST00000619005 101 ntBASIC-2.13□□□□□ -2.75
USF3Q68DE3 Y_RNA.51-201ENST00000362725 102 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 RNU6-1215P-201ENST00000384441 102 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 MTND1P29-201ENST00000448112 647 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 RNU6-656P-201ENST00000516785 107 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 U2.18-201ENST00000622185 84 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 Y_RNA.252-201ENST00000364556 101 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 MIR577-201ENST00000385196 96 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 MIR3149-201ENST00000584629 83 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 U2.7-201ENST00000619197 100 ntBASIC-2.14□□□□□ -2.75
USF3Q68DE3 MIR429-201ENST00000362106 83 ntBASIC-2.15□□□□□ -2.75
USF3Q68DE3 Y_RNA.183-201ENST00000363882 113 ntBASIC-2.15□□□□□ -2.75
USF3Q68DE3 Y_RNA.420-201ENST00000384043 110 ntBASIC-2.15□□□□□ -2.75
USF3Q68DE3 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.15□□□□□ -2.75
USF3Q68DE3 Y_RNA.395-201ENST00000383945 109 ntBASIC-2.15□□□□□ -2.75
USF3Q68DE3 RNU7-174P-201ENST00000516248 59 ntBASIC-2.15□□□□□ -2.75
USF3Q68DE3 MIR581-201ENST00000384895 96 ntBASIC-2.16□□□□□ -2.76
USF3Q68DE3 MIR548D2-201ENST00000384955 97 ntBASIC-2.16□□□□□ -2.76
Retrieved 100 of 98,524 protein–RNA pairs in 271.2 ms